GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002570-TA|BGIBMGA002570-PA|IPR007676|Ribophorin I
         (463 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-1857|AAS64675.1|  458|Drosophila melanogaster CG33303-P...   485   e-137
BT011096-1|AAR82762.1|  464|Drosophila melanogaster RE30726p pro...   482   e-136
BT001395-1|AAN71150.1|  371|Drosophila melanogaster GH05770p pro...   455   e-128

>AE014134-1857|AAS64675.1|  458|Drosophila melanogaster CG33303-PA
           protein.
          Length = 458

 Score =  485 bits (1196), Expect = e-137
 Identities = 232/440 (52%), Positives = 314/440 (71%), Gaps = 10/440 (2%)

Query: 25  TISSDIKLKNVDRTVDISTQLVKVVSKIVLENSGKSSVKHFLFAVEEAAKNNLAFIGAKD 84
           T + +I   NV+RT+D+++QLVK  +KI  E+S    +  ++F   E +   LA+I  KD
Sbjct: 28  TANGEIVNTNVERTLDLTSQLVKTTTKISAEDSAGKPIVEYVFFTSEPS---LAYIDVKD 84

Query: 85  SNSKDLRLAETT-VKGYDYVKFWRVELKEPLNAGATVNVVVETVFTKALQPYPTAITQQE 143
           ++ K +       VKG     F       P  A A    +VETV +K ++P+P  I Q +
Sbjct: 85  ASDKSVPFKRNEPVKGEQSFTF-----TFP-RAAAKQTFIVETVASKGIRPHPEEIRQND 138

Query: 144 DQFVKYVGNLYTYSPYYTSTQKTSVILNTKTVESFTKVKPFSQVDGTIIYGPYANVGPFT 203
            QFVKY GNL+ YS Y T++QKT+V L++  + S T+VKPFS     I  GPY NV  F+
Sbjct: 139 KQFVKYTGNLHLYSKYRTNSQKTNVKLSSSNILSHTQVKPFSVSSNKITLGPYENVEAFS 198

Query: 204 EKELSIHYKNNSPFLTVTRVERLIEVSHWGNIAIEEVIEIEHTGAKLKGPFSRYDYQQDH 263
           ++ L IHY+N++PF+TV  +ER +E+SHWGNIA++E I++ HTGAKLKG FSRYD+Q++ 
Sbjct: 199 QEPLVIHYENSAPFVTVNTLERTLEISHWGNIAVQESIQMTHTGAKLKGSFSRYDFQKEG 258

Query: 264 HSGPASVRAYKTLLPASASDVYYRDTNGNISTSNMKVKKDSVELDLRPRYPLFGGWRTHY 323
            SG A++++YKT LPASAS VYYRDTNGNISTSNM   +D +EL+LRPR+PLFGGW+T Y
Sbjct: 259 RSGLAALKSYKTYLPASASGVYYRDTNGNISTSNMNAVRDFIELELRPRFPLFGGWKTQY 318

Query: 324 TLGYNVPSYEYLYHSGNEYLLKMRSIDHIFDDMQVDELVTKIILPEGSTGIKLNIPYSVT 383
           TLGYNVPSYEY+++ GN+Y LKM  IDHI+D+M +DE   KIILPEGS+ I+L+ PYS++
Sbjct: 319 TLGYNVPSYEYMFNDGNKYQLKMHLIDHIYDNMAIDEATIKIILPEGSSDIRLSTPYSIS 378

Query: 384 RLPDSLHFTYLDTKGRPVISFIKKNIVENHIQDFQIRYTFPRLLMLQEPLLVVGFLYTLF 443
           RLP+ L  TYLDT GRPV+SF K N+VE+HI DF + Y+F +  MLQEPLLV GF+Y +F
Sbjct: 379 RLPNELVHTYLDTIGRPVVSFSKSNLVESHISDFTLHYSFSKTSMLQEPLLVSGFIYIIF 438

Query: 444 LCVIIYVRLDFSIHKSEHKD 463
           L  I+++RLDFSI    HK+
Sbjct: 439 LFTIVFLRLDFSITSHAHKE 458


>BT011096-1|AAR82762.1|  464|Drosophila melanogaster RE30726p
           protein.
          Length = 464

 Score =  482 bits (1188), Expect = e-136
 Identities = 231/440 (52%), Positives = 313/440 (71%), Gaps = 10/440 (2%)

Query: 25  TISSDIKLKNVDRTVDISTQLVKVVSKIVLENSGKSSVKHFLFAVEEAAKNNLAFIGAKD 84
           T + +I   NV+RT+D+++QLVK  +KI  E+S    +  ++F   E +   LA+I  KD
Sbjct: 34  TANGEIVNTNVERTLDLTSQLVKTTTKISAEDSAGKPIVEYVFFTSEPS---LAYIDVKD 90

Query: 85  SNSKDLRLAETT-VKGYDYVKFWRVELKEPLNAGATVNVVVETVFTKALQPYPTAITQQE 143
           ++ K +       VKG     F       P  A A    +VETV +K ++P+P  I Q +
Sbjct: 91  ASDKSVPFKRNEPVKGEQSFTF-----TFP-RAAAKQTFIVETVASKGIRPHPEEIRQND 144

Query: 144 DQFVKYVGNLYTYSPYYTSTQKTSVILNTKTVESFTKVKPFSQVDGTIIYGPYANVGPFT 203
            QFVKY GNL+ YS Y T++QKT+V L++  + S T+VKPFS     I  GPY NV  F+
Sbjct: 145 KQFVKYTGNLHLYSKYRTNSQKTNVKLSSSNILSHTQVKPFSVSSNKITLGPYENVEAFS 204

Query: 204 EKELSIHYKNNSPFLTVTRVERLIEVSHWGNIAIEEVIEIEHTGAKLKGPFSRYDYQQDH 263
           ++ L IHY+N++PF+TV  +ER +E+SHWGNIA++E I++ HTGAKLKG FSRYD+Q++ 
Sbjct: 205 QEPLVIHYENSAPFVTVNTLERTLEISHWGNIAVQESIQMTHTGAKLKGSFSRYDFQKEG 264

Query: 264 HSGPASVRAYKTLLPASASDVYYRDTNGNISTSNMKVKKDSVELDLRPRYPLFGGWRTHY 323
            SG A++++YKT LPASAS VYYRDTNGNISTSNM   +D +EL+LRPR+ LFGGW+T Y
Sbjct: 265 RSGLAALKSYKTYLPASASGVYYRDTNGNISTSNMNAVRDFIELELRPRFTLFGGWKTQY 324

Query: 324 TLGYNVPSYEYLYHSGNEYLLKMRSIDHIFDDMQVDELVTKIILPEGSTGIKLNIPYSVT 383
           TLGYNVPSYEY+++ GN+Y LKM  IDHI+D+M +DE   KIILPEGS+ I+L+ PYS++
Sbjct: 325 TLGYNVPSYEYMFNDGNKYQLKMHLIDHIYDNMAIDEATIKIILPEGSSDIRLSTPYSIS 384

Query: 384 RLPDSLHFTYLDTKGRPVISFIKKNIVENHIQDFQIRYTFPRLLMLQEPLLVVGFLYTLF 443
           RLP+ L  TYLDT GRPV+SF K N+VE+HI DF + Y+F +  MLQEPLLV GF+Y +F
Sbjct: 385 RLPNELVHTYLDTIGRPVVSFSKSNLVESHISDFTLHYSFSKTSMLQEPLLVSGFIYIIF 444

Query: 444 LCVIIYVRLDFSIHKSEHKD 463
           L  I+++RLDFSI    HK+
Sbjct: 445 LFTIVFLRLDFSITSHAHKE 464


>BT001395-1|AAN71150.1|  371|Drosophila melanogaster GH05770p
           protein.
          Length = 371

 Score =  455 bits (1121), Expect = e-128
 Identities = 204/348 (58%), Positives = 269/348 (77%)

Query: 116 AGATVNVVVETVFTKALQPYPTAITQQEDQFVKYVGNLYTYSPYYTSTQKTSVILNTKTV 175
           A A    +VETV +K ++P+P  I Q + QFVKY GNL+ YS Y T++QKT+V L++  +
Sbjct: 24  AAAKQTFIVETVASKGIRPHPEEIRQNDKQFVKYTGNLHLYSKYRTNSQKTNVKLSSSNI 83

Query: 176 ESFTKVKPFSQVDGTIIYGPYANVGPFTEKELSIHYKNNSPFLTVTRVERLIEVSHWGNI 235
            S T+VKPFS     I  GPY NV  F+++ L IHY+N++PF+TV  +ER +E+SHWGNI
Sbjct: 84  LSHTQVKPFSVSSNKITLGPYENVEAFSQEPLVIHYENSAPFVTVNTLERTLEISHWGNI 143

Query: 236 AIEEVIEIEHTGAKLKGPFSRYDYQQDHHSGPASVRAYKTLLPASASDVYYRDTNGNIST 295
           A++E I++ HTGAKLKG FSRYD+Q++  SG A++++YKT LPASAS VYYRDTNGNIST
Sbjct: 144 AVQESIQMTHTGAKLKGSFSRYDFQKEGRSGLAALKSYKTYLPASASGVYYRDTNGNIST 203

Query: 296 SNMKVKKDSVELDLRPRYPLFGGWRTHYTLGYNVPSYEYLYHSGNEYLLKMRSIDHIFDD 355
           SNM   +D +EL+LRPR+PLFGGW+T YTLGYNVPSYEY+++ GN+Y LKM  IDHI+D+
Sbjct: 204 SNMNAVRDFIELELRPRFPLFGGWKTQYTLGYNVPSYEYMFNDGNKYQLKMHLIDHIYDN 263

Query: 356 MQVDELVTKIILPEGSTGIKLNIPYSVTRLPDSLHFTYLDTKGRPVISFIKKNIVENHIQ 415
           M +DE   KIILPEGS+ I+L+ PYS++RLP+ L  TYLDT GRPV+SF K N+VE+HI 
Sbjct: 264 MAIDEATIKIILPEGSSDIRLSTPYSISRLPNELVHTYLDTIGRPVVSFSKSNLVESHIS 323

Query: 416 DFQIRYTFPRLLMLQEPLLVVGFLYTLFLCVIIYVRLDFSIHKSEHKD 463
           DF + Y+F +  MLQEPLLV GF+Y +FL  I+++RLDFSI    HK+
Sbjct: 324 DFTLHYSFSKTSMLQEPLLVSGFIYIIFLFTIVFLRLDFSITSHAHKE 371


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.318    0.135    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,722,012
Number of Sequences: 52641
Number of extensions: 887590
Number of successful extensions: 2163
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2158
Number of HSP's gapped (non-prelim): 3
length of query: 463
length of database: 24,830,863
effective HSP length: 87
effective length of query: 376
effective length of database: 20,251,096
effective search space: 7614412096
effective search space used: 7614412096
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 64 (29.9 bits)