Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002570-TA|BGIBMGA002570-PA|IPR007676|Ribophorin I
(463 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039052-5|AAF98626.2| 586|Caenorhabditis elegans Hypothetical ... 388 e-108
Z83111-5|CAB05531.1| 137|Caenorhabditis elegans Hypothetical pr... 31 1.3
U41532-8|AAK68318.1| 331|Caenorhabditis elegans Hypothetical pr... 31 1.7
U41532-7|ABD63237.1| 769|Caenorhabditis elegans Hypothetical pr... 31 1.7
U41532-6|AAF99908.2| 812|Caenorhabditis elegans Hypothetical pr... 31 1.7
Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical pr... 30 4.0
Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical pr... 30 4.0
AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis p... 30 4.0
U41546-6|AAC48223.1| 798|Caenorhabditis elegans Hypothetical pr... 29 9.2
>AF039052-5|AAF98626.2| 586|Caenorhabditis elegans Hypothetical
protein T22D1.4 protein.
Length = 586
Score = 388 bits (955), Expect = e-108
Identities = 194/436 (44%), Positives = 272/436 (62%), Gaps = 5/436 (1%)
Query: 31 KLKNVDRTVDISTQLVKVVSKIVLENSGKSSVKHFLFAVEEAAKNNLAFIGAKDSNSKD- 89
K NVDRT+D ++Q+VKV + EN G L A+ + L+FI A SK
Sbjct: 20 KAANVDRTIDATSQIVKVSTLYSFENVGNGPQSKVLIALSKEESATLSFISAGIDGSKGK 79
Query: 90 LRLAETTVKGYDYVKFWRVELKEPLNAGATVNVVVETVFTKALQPYPTAITQQEDQFVKY 149
L+++E + + + V+L+ P+ GA V + + T+ L+P P+ I Q + QFV
Sbjct: 80 LKISEKPAE--KDLAVYEVDLRTPVAKGAKVTIRINLRITQVLEPLPSKIQQSDSQFVVL 137
Query: 150 VGNLYTYSPYYTSTQKTSV-ILNTKTVESFTKVKPFSQVDGTIIYGPYANVGPFTEKELS 208
+ Y S Y T TQKT++ + S T V P Q +IYGPY N+ F K +
Sbjct: 138 HTSAYVPSLYETVTQKTTIRTTQGGKLLSATTVSPSKQETERVIYGPYVNIPAFETKPVK 197
Query: 209 IHYKNNSPFLTVTRVERLIEVSHWGNIAIEEVIEIEHTGAKLKGPFSRYDYQQDHHSG-P 267
+HY+NNSPF+ T VER IEVSHWGNIA+EE IE+ H GA+L GPFSR DYQ D
Sbjct: 198 VHYENNSPFVIATIVERFIEVSHWGNIAVEEYIELVHKGAELDGPFSRIDYQMDRRGRRQ 257
Query: 268 ASVRAYKTLLPASASDVYYRDTNGNISTSNMKVKKDSVELDLRPRYPLFGGWRTHYTLGY 327
+++ + T+LPA A D+YYRD GNISTS ++++ DSV++++RPR+PLFGGW+T Y +GY
Sbjct: 258 PALQQFTTVLPAQAKDIYYRDEIGNISTSAVRIRADSVDVEIRPRFPLFGGWKTSYVIGY 317
Query: 328 NVPSYEYLYHSGNEYLLKMRSIDHIFDDMQVDELVTKIILPEGSTGIKLNIPYSVTRLPD 387
N+PS EYLY GN+Y LK + DH+F+D+ V++L TK++LPE +K+ PY+V R P+
Sbjct: 318 NLPSEEYLYSKGNQYALKTKLFDHVFNDIVVEKLRTKVLLPEHVKRVKVATPYAVDRRPE 377
Query: 388 SLHFTYLDTKGRPVISFIKKNIVENHIQDFQIRYTFPRLLMLQEPLLVVGFLYTLFLCVI 447
L TYLDT GR V+ K+NIV +H Q F + Y F + ML+EPLL F ++LF +I
Sbjct: 378 ELKPTYLDTTGRLVLVLEKENIVPDHSQFFTVTYEFEFVDMLREPLLASAFFFSLFFVII 437
Query: 448 IYVRLDFSIHKSEHKD 463
+Y R DF+I KD
Sbjct: 438 VYSRFDFTISSDPAKD 453
>Z83111-5|CAB05531.1| 137|Caenorhabditis elegans Hypothetical
protein F57G8.7 protein.
Length = 137
Score = 31.5 bits (68), Expect = 1.3
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Query: 277 LPASASDVYYRDTNGNISTSNMKVKKDSVELDLRPRYPLFGGWRTHYTLGYNVPSYEYLY 336
+PA A DV+ T G+I K+K SVE P G W + G + S Y Y
Sbjct: 23 IPAGAKDVHLPITIGDIKAITRKLKNGSVE-TWNVVGPNKGTWVD--SKGKKIDSSNYSY 79
Query: 337 HSGNEYLLKMRSIDHIFDDMQ 357
+G + K+ D F D +
Sbjct: 80 KAGTIVIKKVSKNDEGFYDYE 100
>U41532-8|AAK68318.1| 331|Caenorhabditis elegans Hypothetical
protein F11D5.1b protein.
Length = 331
Score = 31.1 bits (67), Expect = 1.7
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 155 TYSPYYTSTQKTSVILNTKTVESFTK 180
TYSP YTST SV L++K VE +K
Sbjct: 53 TYSPSYTSTSLNSVSLSSKYVEEKSK 78
>U41532-7|ABD63237.1| 769|Caenorhabditis elegans Hypothetical
protein F11D5.1c protein.
Length = 769
Score = 31.1 bits (67), Expect = 1.7
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 155 TYSPYYTSTQKTSVILNTKTVESFTK 180
TYSP YTST SV L++K VE +K
Sbjct: 491 TYSPSYTSTSLNSVSLSSKYVEEKSK 516
>U41532-6|AAF99908.2| 812|Caenorhabditis elegans Hypothetical
protein F11D5.1a protein.
Length = 812
Score = 31.1 bits (67), Expect = 1.7
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 155 TYSPYYTSTQKTSVILNTKTVESFTK 180
TYSP YTST SV L++K VE +K
Sbjct: 534 TYSPSYTSTSLNSVSLSSKYVEEKSK 559
>Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical
protein F18C12.2b protein.
Length = 2271
Score = 29.9 bits (64), Expect = 4.0
Identities = 12/40 (30%), Positives = 24/40 (60%)
Query: 377 NIPYSVTRLPDSLHFTYLDTKGRPVISFIKKNIVENHIQD 416
N+PYS R S + + KG+ +++ I+ ++EN+ +D
Sbjct: 384 NVPYSGLRFSKSHEGFFSENKGKVIVNAIEAVLMENYTKD 423
>Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical
protein F18C12.2a protein.
Length = 2279
Score = 29.9 bits (64), Expect = 4.0
Identities = 12/40 (30%), Positives = 24/40 (60%)
Query: 377 NIPYSVTRLPDSLHFTYLDTKGRPVISFIKKNIVENHIQD 416
N+PYS R S + + KG+ +++ I+ ++EN+ +D
Sbjct: 384 NVPYSGLRFSKSHEGFFSENKGKVIVNAIEAVLMENYTKD 423
>AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis
protein RME-8 protein.
Length = 2279
Score = 29.9 bits (64), Expect = 4.0
Identities = 12/40 (30%), Positives = 24/40 (60%)
Query: 377 NIPYSVTRLPDSLHFTYLDTKGRPVISFIKKNIVENHIQD 416
N+PYS R S + + KG+ +++ I+ ++EN+ +D
Sbjct: 384 NVPYSGLRFSKSHEGFFSENKGKVIVNAIEAVLMENYTKD 423
>U41546-6|AAC48223.1| 798|Caenorhabditis elegans Hypothetical
protein T25B6.2 protein.
Length = 798
Score = 28.7 bits (61), Expect = 9.2
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 39 VDISTQLVKVVSKIVLENSGKSSVKHFLFAVEEAAKNNLA 78
VD+ +++V +SKI + ++ S + A E KNNLA
Sbjct: 119 VDVYSEIVAALSKIDVTSTTTSKTERITKAAFETCKNNLA 158
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.318 0.135 0.389
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,748,968
Number of Sequences: 27539
Number of extensions: 465741
Number of successful extensions: 1187
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1176
Number of HSP's gapped (non-prelim): 9
length of query: 463
length of database: 12,573,161
effective HSP length: 84
effective length of query: 379
effective length of database: 10,259,885
effective search space: 3888496415
effective search space used: 3888496415
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)
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