GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002569-TA|BGIBMGA002569-PA|IPR000886|Endoplasmic
reticulum targeting sequence, IPR006662|Thioredoxin-related,
IPR012336|Thioredoxin-like fold, IPR005788|Disulphide isomerase,
IPR013766|Thioredoxin domain
         (419 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    22   9.3  

>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 11/26 (42%), Positives = 14/26 (53%)

Query: 75  LDADEHRSVSQKYGVTGFPTIKIFTG 100
           +DA      ++ YGV GF  I  FTG
Sbjct: 279 IDAGMSGPYTKGYGVMGFNEICEFTG 304


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.134    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,147
Number of Sequences: 317
Number of extensions: 3294
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 1
length of query: 419
length of database: 114,650
effective HSP length: 59
effective length of query: 360
effective length of database: 95,947
effective search space: 34540920
effective search space used: 34540920
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 44 (21.8 bits)