GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002568-TA|BGIBMGA002568-PA|undefined
         (99 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81131-1|CAB03423.4|  464|Caenorhabditis elegans Hypothetical pr...    27   1.7  
Z46343-8|CAA86461.1|  549|Caenorhabditis elegans Hypothetical pr...    27   2.9  
Z35598-9|CAA84658.1|  549|Caenorhabditis elegans Hypothetical pr...    27   2.9  
U23411-2|AAC46731.2|  471|Caenorhabditis elegans Hypothetical pr...    26   3.9  
Z81497-2|CAB04078.1|  781|Caenorhabditis elegans Hypothetical pr...    26   5.1  
Z68115-1|CAA92164.1|  231|Caenorhabditis elegans Hypothetical pr...    25   6.8  
Z47812-1|CAA87795.2| 1326|Caenorhabditis elegans Hypothetical pr...    25   6.8  
Z78540-4|CAB01734.2|  624|Caenorhabditis elegans Hypothetical pr...    25   9.0  

>Z81131-1|CAB03423.4|  464|Caenorhabditis elegans Hypothetical
           protein T24D1.2 protein.
          Length = 464

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 25  DERDASVSIENNNDCEDEEGKGFNESGSRELAYNRQG-YGSNENRRGGR 72
           +ER+A+++I ++    D E +  +E      A+N +G Y  +    GGR
Sbjct: 180 EERNATITISSSESDADSEAESDHEERDMPRAFNPRGSYARSGRGPGGR 228


>Z46343-8|CAA86461.1|  549|Caenorhabditis elegans Hypothetical
           protein F10F2.9 protein.
          Length = 549

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 44  GKGFNESGSRELAYNRQGYGSNENRRGG 71
           G   N++ +    Y++ GYGSN NR  G
Sbjct: 405 GNQDNDNDNFGGGYSKNGYGSNNNRNDG 432


>Z35598-9|CAA84658.1|  549|Caenorhabditis elegans Hypothetical
           protein F10F2.9 protein.
          Length = 549

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 44  GKGFNESGSRELAYNRQGYGSNENRRGG 71
           G   N++ +    Y++ GYGSN NR  G
Sbjct: 405 GNQDNDNDNFGGGYSKNGYGSNNNRNDG 432


>U23411-2|AAC46731.2|  471|Caenorhabditis elegans Hypothetical
           protein T25E4.2 protein.
          Length = 471

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 45  KGFNESGSRELAYNRQGYGSNENR 68
           KG  E  +R +AY + GYG+  +R
Sbjct: 340 KGLREKFNRAVAYTKSGYGTVRSR 363


>Z81497-2|CAB04078.1|  781|Caenorhabditis elegans Hypothetical
           protein F10C2.5 protein.
          Length = 781

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 26  ERDASVSIENNNDCEDEEGKGFNESGSRELAYNRQGYGSNEN 67
           +RD  V ++  N+ ++ E     E G  +  Y    YG NEN
Sbjct: 503 KRDQEVGVKQVNNGDEHEKMNRTEKGGEK--YFENQYGKNEN 542


>Z68115-1|CAA92164.1|  231|Caenorhabditis elegans Hypothetical
           protein F19H6.2 protein.
          Length = 231

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 2/27 (7%)

Query: 45  KGFNESGSR--ELAYNRQGYGSNENRR 69
           +GF+E   +  + +YN QG+ SN  RR
Sbjct: 195 RGFDEENGKKKQYSYNVQGFSSNRARR 221


>Z47812-1|CAA87795.2| 1326|Caenorhabditis elegans Hypothetical protein
            T05H10.1 protein.
          Length = 1326

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 11/32 (34%), Positives = 16/32 (50%)

Query: 41   DEEGKGFNESGSRELAYNRQGYGSNENRRGGR 72
            DEE K  +E   +++     G  +N NRR  R
Sbjct: 1283 DEEAKVLSEDERKQIKIKENGQSANANRRKER 1314


>Z78540-4|CAB01734.2|  624|Caenorhabditis elegans Hypothetical
           protein C33G3.6 protein.
          Length = 624

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/35 (28%), Positives = 16/35 (45%)

Query: 32  SIENNNDCEDEEGKGFNESGSRELAYNRQGYGSNE 66
           SI ++ D  +    G N +   +  YN + YG  E
Sbjct: 311 SINSHQDKYENSSNGINYTDRNQDVYNNKSYGQQE 345


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.305    0.128    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,690,129
Number of Sequences: 27539
Number of extensions: 55067
Number of successful extensions: 92
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 82
Number of HSP's gapped (non-prelim): 12
length of query: 99
length of database: 12,573,161
effective HSP length: 70
effective length of query: 29
effective length of database: 10,645,431
effective search space: 308717499
effective search space used: 308717499
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)
S2: 52 (25.0 bits)