GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002565-TA|BGIBMGA002565-PA|undefined
         (248 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    36   0.004
SPAC26H5.09c |||GFO/IDH/MocA family oxidoreductase|Schizosacchar...    26   4.5  
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    26   5.9  
SPCC1795.03 |gms1||UDP-galactose transporter Gms1|Schizosaccharo...    26   5.9  
SPBC115.03 ||SPBC839.18c|gfo/idh/mocA family oxidoreductase |Sch...    26   5.9  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   7.8  
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    25   7.8  

>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 36.3 bits (80), Expect = 0.004
 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 4/48 (8%)

Query: 81  VYIPDRRRQTLADTSYVPQQENEV--YYPQQPENPIFSPTQATELADP 126
           VY+PD          Y+P+    V  YYPQQP  P+F  ++ TEL DP
Sbjct: 497 VYVPDAT-DAAKPQYYIPKDPYPVPHYYPQQPL-PLFDSSEMTELVDP 542


>SPAC26H5.09c |||GFO/IDH/MocA family
          oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 369

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/37 (32%), Positives = 20/37 (54%)

Query: 58 VGGGMAAFMYRQPEAAQAPSTGQVYIPDRRRQTLADT 94
          +G GM+AF++  P     P+  +VY    RR T  ++
Sbjct: 9  LGTGMSAFIFHYPFLKALPNHFEVYAAWERRATSTES 45


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 5/55 (9%)

Query: 64  AFMYRQPEAAQAPSTGQV-----YIPDRRRQTLADTSYVPQQENEVYYPQQPENP 113
           AF +R P+  + PS G +     YIP+   Q + +T      +++     +P  P
Sbjct: 525 AFKFRPPQGVELPSAGFIAGDSSYIPEPNPQPVPETEVTIDPKSDRLEALEPFEP 579


>SPCC1795.03 |gms1||UDP-galactose transporter
           Gms1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 353

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)

Query: 63  AAFMYRQPEAAQAPSTGQVYIP 84
           A F+Y +PE+  +PS G  YIP
Sbjct: 318 ATFLYTKPESKPSPSRG-TYIP 338


>SPBC115.03 ||SPBC839.18c|gfo/idh/mocA family oxidoreductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 368

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/61 (24%), Positives = 25/61 (40%)

Query: 51  PYYNPRAVGGGMAAFMYRQPEAAQAPSTGQVYIPDRRRQTLADTSYVPQQENEVYYPQQP 110
           P      +G G++AF++  P     PS  ++Y    RR T+  +       N + Y    
Sbjct: 2   PPIKTAVLGTGVSAFVFHFPFLEALPSKFEIYACLERRATVTQSKARSAYPNILVYTNLD 61

Query: 111 E 111
           E
Sbjct: 62  E 62


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
           Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/43 (25%), Positives = 22/43 (51%)

Query: 94  TSYVPQQENEVYYPQQPENPIFSPTQATELADPTEKIELYSTT 136
           TS+ PQ ++ +Y     +  + S T+  +  + T K++  S T
Sbjct: 720 TSFNPQHDSRIYNHNGKQKLVISFTETMDCNEITSKLQFSSKT 762


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/29 (31%), Positives = 13/29 (44%)

Query: 100 QENEVYYPQQPENPIFSPTQATELADPTE 128
           + N   YPQ  + P+  P  A    DP +
Sbjct: 155 EHNGPVYPQDQQGPVIIPNSAISSTDPDD 183


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.134    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 935,037
Number of Sequences: 5004
Number of extensions: 33467
Number of successful extensions: 88
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 84
Number of HSP's gapped (non-prelim): 7
length of query: 248
length of database: 2,362,478
effective HSP length: 71
effective length of query: 177
effective length of database: 2,007,194
effective search space: 355273338
effective search space used: 355273338
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)