Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002565-TA|BGIBMGA002565-PA|undefined
(248 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0874 - 25580417-25580419,25580504-25580604,25580828-255814... 29 2.7
09_02_0495 + 9880714-9881196 29 3.5
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322... 29 3.5
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 29 3.5
01_06_1332 - 36379736-36379909,36380395-36380459,36380534-363806... 29 3.5
05_03_0459 - 14284513-14286336 29 4.7
10_08_0911 - 21499196-21499236,21499368-21499488,21499665-214997... 28 6.2
09_06_0264 - 21929086-21931368 28 6.2
02_05_0894 - 32585640-32585672,32585939-32585967,32586937-32588443 28 6.2
10_08_0216 - 15942379-15942852,15942956-15943033 28 8.2
02_03_0313 - 17590109-17590148,17590254-17590382,17590479-175906... 28 8.2
>06_03_0874 -
25580417-25580419,25580504-25580604,25580828-25581411,
25581523-25581594,25581667-25581793,25583412-25583516,
25583643-25583676
Length = 341
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
Query: 64 AFMYRQPEAAQAPSTGQVYIPDRRRQTLADTSYVPQQENEVYYPQQPENPIFSPTQATEL 123
+ + R E A P T Y P +Y PQ + E Y P QP+ + P +
Sbjct: 209 SLLARDVEHAAYPPTSTTYPPQPYPPQPQGQTYPPQPQGETYQP-QPQRETYPPQPQVQP 267
Query: 124 ADPTEKIELY 133
P + + Y
Sbjct: 268 YPPKPQGQPY 277
>09_02_0495 + 9880714-9881196
Length = 160
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/36 (41%), Positives = 17/36 (47%)
Query: 16 VQAYPYNPYYGNVDSLSYGSGDSNRGGLVMSRYYNP 51
V +YP P G+ S S G GD GGL Y P
Sbjct: 47 VNSYPPPPPAGSSSSSSSGGGDGGAGGLFGGTYPPP 82
>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
3220080-3223195,3223303-3223561,3223665-3223951,
3224029-3224364,3224463-3224604,3224690-3224910,
3224990-3225151,3225242-3225400,3225488-3225787,
3226306-3226569,3227370-3227453
Length = 1855
Score = 29.1 bits (62), Expect = 3.5
Identities = 23/82 (28%), Positives = 32/82 (39%), Gaps = 7/82 (8%)
Query: 41 GGLVMSRYYNPYYNPRAVGGGMAAFMYRQPEAAQAPSTGQVYIPDRRRQTLADTSYVPQQ 100
GG+ S +P Y P + GG + P +P T Y P + SY P
Sbjct: 1531 GGMAFSPVPSPGYTPSSGGGYSPSSPVYSPGPGYSP-TSPSYSPASPSYSPTSPSYTP-- 1587
Query: 101 ENEVYYPQQPE----NPIFSPT 118
+ Y P P +P +SPT
Sbjct: 1588 GSPTYSPTSPSYSPTSPSYSPT 1609
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 4/78 (5%)
Query: 50 NPYYNPRAVGGGMAAFMYRQPEAAQAPSTGQVYIPDRRRQTLADTSYVPQQENEVYYPQQ 109
+P Y+P + + Y +P T VY P + SY P + Y
Sbjct: 1652 SPIYSPSSPIYSPTSLSYSPTSPVYSP-TSPVYNPTSSAYSPTSPSYNPTSPS---YSYS 1707
Query: 110 PENPIFSPTQATELADPT 127
P +P +SPT + PT
Sbjct: 1708 PTSPSYSPTSPSYSYSPT 1725
>01_06_1332 -
36379736-36379909,36380395-36380459,36380534-36380612,
36380794-36380868,36381106-36381609,36382046-36382246,
36383033-36383566
Length = 543
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 45 MSRYYNPYYNPRAVGGGMAAFMYRQPEAAQAPSTGQ 80
+S +P +P A GGG + R P+ QAPS GQ
Sbjct: 48 LSAISSPQLDPSAAGGGAMDYPPRPPQ-MQAPSPGQ 82
>05_03_0459 - 14284513-14286336
Length = 607
Score = 28.7 bits (61), Expect = 4.7
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 41 GGLVMSRYYNPYYNPRAVGGGMAAFMYRQ---PEAAQAPSTGQVYIPDRRRQTLADTSYV 97
GG + +P + R G F+ RQ PEAA A G V P++RR+T A S +
Sbjct: 40 GGAAAAGEQHPDHPSRGKKSGR--FLRRQETPPEAATAID-GDVSPPEKRRKTTA-ASPI 95
Query: 98 PQQENEVYYPQQPE 111
+ E EV P P+
Sbjct: 96 VEVEVEVIEPTMPK 109
>10_08_0911 - 21499196-21499236,21499368-21499488,21499665-21499789,
21500187-21500418,21500488-21500668,21501342-21501438,
21501641-21501779,21502024-21502351,21502890-21503137,
21503270-21503543,21504200-21504291,21504451-21504521,
21505091-21505181,21506526-21507380,21507482-21507594,
21508007-21508074,21508655-21508835,21509084-21509186,
21509273-21509379,21510046-21511584,21511661-21511771,
21511856-21511908,21511988-21512063,21512147-21512366,
21512477-21512901,21513193-21513372,21513503-21515474
Length = 2680
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 74 QAPSTGQ--VYIPDRRRQTLADTSY---VPQQENE-VYYPQQPENPIFSPTQATELADPT 127
QAPST IP+ +++ TS PQ+ + P PE PI +P T++A T
Sbjct: 1157 QAPSTISPLAVIPEEKQKASVSTSKRGATPQKSRKRKKAPASPEQPIIAPLLKTDIASVT 1216
>09_06_0264 - 21929086-21931368
Length = 760
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 89 QTLADTSYVPQQENEVYYPQQPENPIFSPTQATELADPTEKI 130
+TLAD +P+ E E +P++ +SP+Q +PT +
Sbjct: 699 KTLADKLQMPEPEPEPEREPEPKSGPYSPSQEIVQGEPTATV 740
>02_05_0894 - 32585640-32585672,32585939-32585967,32586937-32588443
Length = 522
Score = 28.3 bits (60), Expect = 6.2
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 1 MKVMYAFVMMSCA-LLVQAYPYNPYYGNVD--SLSYGSGDSNRGGL 43
MK M F+ + + L+V AYP+ Y GN D SL Y N G L
Sbjct: 210 MKPMLDFLAQTGSYLMVNAYPFFAYSGNADVISLDYALFRPNAGVL 255
>10_08_0216 - 15942379-15942852,15942956-15943033
Length = 183
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/31 (41%), Positives = 14/31 (45%)
Query: 34 GSGDSNRGGLVMSRYYNPYYNPRAVGGGMAA 64
G G G YY PYY P A GG A+
Sbjct: 47 GGGYYGPYGPYYGPYYGPYYGPYASGGAAAS 77
>02_03_0313 -
17590109-17590148,17590254-17590382,17590479-17590612,
17590779-17590841,17590920-17591070,17593372-17593424,
17593483-17593629,17593839-17594163,17594240-17594409,
17595252-17595453,17596065-17596273,17597051-17597260,
17597360-17597489,17599664-17600402,17600411-17600531
Length = 940
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 56 RAVGGGMAAFMYRQPEAAQAPSTGQVYIPDR 86
RA GG AA R+ A Q P G VY+ R
Sbjct: 191 RAGKGGAAAAAQREQHACQPPGGGAVYMSSR 221
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.134 0.407
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,293,473
Number of Sequences: 37544
Number of extensions: 239390
Number of successful extensions: 592
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 578
Number of HSP's gapped (non-prelim): 16
length of query: 248
length of database: 14,793,348
effective HSP length: 80
effective length of query: 168
effective length of database: 11,789,828
effective search space: 1980691104
effective search space used: 1980691104
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)
- SilkBase 1999-2023 -