Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002565-TA|BGIBMGA002565-PA|undefined
(248 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF229057-1|AAL71904.1| 418|Homo sapiens hexaribonucleotide bind... 34 0.41
AF109120-2|AAL83408.1| 392|Homo sapiens hexaribonucleotide bind... 34 0.41
AF109120-1|AAL83409.1| 418|Homo sapiens hexaribonucleotide bind... 34 0.41
AF094849-1|AAL83405.1| 392|Homo sapiens hexaribonucleotide bind... 34 0.41
DQ084244-1|AAZ31363.1| 758|Homo sapiens polycystic kidney disea... 31 5.0
BC025665-1|AAH25665.1| 805|Homo sapiens polycystic kidney disea... 31 5.0
AL139819-2|CAH72822.1| 805|Homo sapiens polycystic kidney disea... 31 5.0
AF153474-1|AAF28108.1| 805|Homo sapiens polycystic kidney disea... 31 5.0
AF094827-1|AAD08695.1| 710|Homo sapiens PKD2L protein. 31 5.0
AF092170-1|AAD16101.1| 665|Homo sapiens polycystic kidney disea... 31 5.0
AF073481-1|AAD41638.1| 805|Homo sapiens polycystin-L protein. 31 5.0
AF053316-1|AAD51859.1| 763|Homo sapiens polycystin-2 homolog pr... 31 5.0
>AF229057-1|AAL71904.1| 418|Homo sapiens hexaribonucleotide binding
protein 1 isoform gamma protein.
Length = 418
Score = 34.3 bits (75), Expect = 0.41
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 7/56 (12%)
Query: 41 GGLVMSRYYNPYYNPRAVGGGMAAFMYRQP----EAAQAPSTGQVYIPDRRRQTLA 92
GG+V Y P Y + + GG AA+ Y QP AA + S G+VY D LA
Sbjct: 316 GGVV---YQEPVYGNKLLQGGYAAYRYAQPTPATAAAYSDSYGRVYAADPYHHALA 368
>AF109120-2|AAL83408.1| 392|Homo sapiens hexaribonucleotide binding
protein 1 isoform alpha protein.
Length = 392
Score = 34.3 bits (75), Expect = 0.41
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 7/56 (12%)
Query: 41 GGLVMSRYYNPYYNPRAVGGGMAAFMYRQP----EAAQAPSTGQVYIPDRRRQTLA 92
GG+V Y P Y + + GG AA+ Y QP AA + S G+VY D LA
Sbjct: 316 GGVV---YQEPVYGNKLLQGGYAAYRYAQPTPATAAAYSDSYGRVYAADPYHHALA 368
>AF109120-1|AAL83409.1| 418|Homo sapiens hexaribonucleotide binding
protein 1 isoform gamma protein.
Length = 418
Score = 34.3 bits (75), Expect = 0.41
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 7/56 (12%)
Query: 41 GGLVMSRYYNPYYNPRAVGGGMAAFMYRQP----EAAQAPSTGQVYIPDRRRQTLA 92
GG+V Y P Y + + GG AA+ Y QP AA + S G+VY D LA
Sbjct: 316 GGVV---YQEPVYGNKLLQGGYAAYRYAQPTPATAAAYSDSYGRVYAADPYHHALA 368
>AF094849-1|AAL83405.1| 392|Homo sapiens hexaribonucleotide binding
protein 1 isoform alpha protein.
Length = 392
Score = 34.3 bits (75), Expect = 0.41
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 7/56 (12%)
Query: 41 GGLVMSRYYNPYYNPRAVGGGMAAFMYRQP----EAAQAPSTGQVYIPDRRRQTLA 92
GG+V Y P Y + + GG AA+ Y QP AA + S G+VY D LA
Sbjct: 316 GGVV---YQEPVYGNKLLQGGYAAYRYAQPTPATAAAYSDSYGRVYAADPYHHALA 368
>DQ084244-1|AAZ31363.1| 758|Homo sapiens polycystic kidney disease
2-like 1 variant protein.
Length = 758
Score = 30.7 bits (66), Expect = 5.0
Identities = 21/85 (24%), Positives = 36/85 (42%)
Query: 37 DSNRGGLVMSRYYNPYYNPRAVGGGMAAFMYRQPEAAQAPSTGQVYIPDRRRQTLADTSY 96
D +G L+ S Y+ +YN +++G G +F+Y + P Q+ + + D
Sbjct: 112 DFAQGPLLDSLYWTKWYNNQSLGHGSHSFIYYENMLLGVPRLRQLKVRNDSCVVHEDFRE 171
Query: 97 VPQQENEVYYPQQPENPIFSPTQAT 121
+VY P + E F P T
Sbjct: 172 DILSCYDVYSPDKEEQLPFGPFNGT 196
>BC025665-1|AAH25665.1| 805|Homo sapiens polycystic kidney disease
2-like 1 protein.
Length = 805
Score = 30.7 bits (66), Expect = 5.0
Identities = 21/85 (24%), Positives = 36/85 (42%)
Query: 37 DSNRGGLVMSRYYNPYYNPRAVGGGMAAFMYRQPEAAQAPSTGQVYIPDRRRQTLADTSY 96
D +G L+ S Y+ +YN +++G G +F+Y + P Q+ + + D
Sbjct: 159 DFAQGPLLDSLYWTKWYNNQSLGHGSHSFIYYENMLLGVPRLRQLKVRNDSCVVHEDFRE 218
Query: 97 VPQQENEVYYPQQPENPIFSPTQAT 121
+VY P + E F P T
Sbjct: 219 DILSCYDVYSPDKEEQLPFGPFNGT 243
>AL139819-2|CAH72822.1| 805|Homo sapiens polycystic kidney disease
2-like 1 protein.
Length = 805
Score = 30.7 bits (66), Expect = 5.0
Identities = 21/85 (24%), Positives = 36/85 (42%)
Query: 37 DSNRGGLVMSRYYNPYYNPRAVGGGMAAFMYRQPEAAQAPSTGQVYIPDRRRQTLADTSY 96
D +G L+ S Y+ +YN +++G G +F+Y + P Q+ + + D
Sbjct: 159 DFAQGPLLDSLYWTKWYNNQSLGHGSHSFIYYENMLLGVPRLRQLKVRNDSCVVHEDFRE 218
Query: 97 VPQQENEVYYPQQPENPIFSPTQAT 121
+VY P + E F P T
Sbjct: 219 DILSCYDVYSPDKEEQLPFGPFNGT 243
>AF153474-1|AAF28108.1| 805|Homo sapiens polycystic kidney disease
2-like protein protein.
Length = 805
Score = 30.7 bits (66), Expect = 5.0
Identities = 21/85 (24%), Positives = 36/85 (42%)
Query: 37 DSNRGGLVMSRYYNPYYNPRAVGGGMAAFMYRQPEAAQAPSTGQVYIPDRRRQTLADTSY 96
D +G L+ S Y+ +YN +++G G +F+Y + P Q+ + + D
Sbjct: 159 DFAQGPLLDSLYWTKWYNNQSLGHGSHSFIYYENMLLGVPRLRQLKVRNDSCVVHEDFRE 218
Query: 97 VPQQENEVYYPQQPENPIFSPTQAT 121
+VY P + E F P T
Sbjct: 219 DILSCYDVYSPDKEEQLPFGPFNGT 243
>AF094827-1|AAD08695.1| 710|Homo sapiens PKD2L protein.
Length = 710
Score = 30.7 bits (66), Expect = 5.0
Identities = 21/85 (24%), Positives = 36/85 (42%)
Query: 37 DSNRGGLVMSRYYNPYYNPRAVGGGMAAFMYRQPEAAQAPSTGQVYIPDRRRQTLADTSY 96
D +G L+ S Y+ +YN +++G G +F+Y + P Q+ + + D
Sbjct: 64 DFAQGPLLDSLYWTKWYNNQSLGHGSHSFIYYENMLLGVPRLRQLKVRNDSCVVHEDFRE 123
Query: 97 VPQQENEVYYPQQPENPIFSPTQAT 121
+VY P + E F P T
Sbjct: 124 DILSCYDVYSPDKEEQLPFGPFNGT 148
>AF092170-1|AAD16101.1| 665|Homo sapiens polycystic kidney disease
2 related protein protein.
Length = 665
Score = 30.7 bits (66), Expect = 5.0
Identities = 21/85 (24%), Positives = 36/85 (42%)
Query: 37 DSNRGGLVMSRYYNPYYNPRAVGGGMAAFMYRQPEAAQAPSTGQVYIPDRRRQTLADTSY 96
D +G L+ S Y+ +YN +++G G +F+Y + P Q+ + + D
Sbjct: 46 DFAQGPLLDSLYWTKWYNNQSLGHGSHSFIYYENMLLGVPRLRQLKVRNDSCVVHEDFRE 105
Query: 97 VPQQENEVYYPQQPENPIFSPTQAT 121
+VY P + E F P T
Sbjct: 106 DILSCYDVYSPDKEEQLPFGPFNGT 130
>AF073481-1|AAD41638.1| 805|Homo sapiens polycystin-L protein.
Length = 805
Score = 30.7 bits (66), Expect = 5.0
Identities = 21/85 (24%), Positives = 36/85 (42%)
Query: 37 DSNRGGLVMSRYYNPYYNPRAVGGGMAAFMYRQPEAAQAPSTGQVYIPDRRRQTLADTSY 96
D +G L+ S Y+ +YN +++G G +F+Y + P Q+ + + D
Sbjct: 159 DFAQGPLLDSLYWTKWYNNQSLGHGSHSFIYYENMLLGVPRLRQLKVRNDSCVVHEDFRE 218
Query: 97 VPQQENEVYYPQQPENPIFSPTQAT 121
+VY P + E F P T
Sbjct: 219 DILSCYDVYSPDKEEQLPFGPFNGT 243
>AF053316-1|AAD51859.1| 763|Homo sapiens polycystin-2 homolog
protein.
Length = 763
Score = 30.7 bits (66), Expect = 5.0
Identities = 21/85 (24%), Positives = 36/85 (42%)
Query: 37 DSNRGGLVMSRYYNPYYNPRAVGGGMAAFMYRQPEAAQAPSTGQVYIPDRRRQTLADTSY 96
D +G L+ S Y+ +YN +++G G +F+Y + P Q+ + + D
Sbjct: 117 DFAQGPLLDSLYWTKWYNNQSLGHGSHSFIYYENMLLGVPRLRQLKVRNDSCVVHEDFRE 176
Query: 97 VPQQENEVYYPQQPENPIFSPTQAT 121
+VY P + E F P T
Sbjct: 177 DILSCYDVYSPDKEEQLPFGPFNGT 201
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.317 0.134 0.407
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,768,095
Number of Sequences: 224733
Number of extensions: 1169198
Number of successful extensions: 2200
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2196
Number of HSP's gapped (non-prelim): 12
length of query: 248
length of database: 73,234,838
effective HSP length: 88
effective length of query: 160
effective length of database: 53,458,334
effective search space: 8553333440
effective search space used: 8553333440
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 64 (29.9 bits)
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