GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002565-TA|BGIBMGA002565-PA|undefined
         (248 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003130-1|AAB54124.2|  423|Caenorhabditis elegans Hypothetical ...    37   0.015
Z74032-2|CAA98466.2|  248|Caenorhabditis elegans Hypothetical pr...    35   0.047
Z83223-4|CAB05716.2|  534|Caenorhabditis elegans Hypothetical pr...    31   0.58 
AL132862-12|CAB60542.1|  380|Caenorhabditis elegans Hypothetical...    29   2.3  
U23139-1|AAK31493.2|  513|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AF067613-12|AAN73861.1|  467|Caenorhabditis elegans Hypothetical...    29   3.1  
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ...    29   3.1  
Z74046-1|CAA98556.2|  178|Caenorhabditis elegans Hypothetical pr...    29   4.1  
U97196-12|AAB52456.2|  564|Caenorhabditis elegans Hypothetical p...    29   4.1  
L13200-7|AAA28189.1|  206|Caenorhabditis elegans Prion-like-(q/n...    28   5.4  
Z93785-1|CAB07858.1|  495|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z81568-3|CAB04592.1|  643|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical pr...    28   7.2  

>AF003130-1|AAB54124.2|  423|Caenorhabditis elegans Hypothetical
           protein F55A12.6 protein.
          Length = 423

 Score = 36.7 bits (81), Expect = 0.015
 Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 19  YPYNPYYGNVDSLSYGSGDSNR--GGLVMSRYYNPYYN-PRAVGGGMAAFMYRQPEA 72
           Y  N YYGN     YG+G  N+  GG   + YYN YYN     GG    + Y Q ++
Sbjct: 138 YYGNGYYGNGYGNGYGNGYYNQYNGGYGGNGYYNQYYNGNNYYGGNRGYYNYNQGQS 194


>Z74032-2|CAA98466.2|  248|Caenorhabditis elegans Hypothetical
           protein F35B12.3 protein.
          Length = 248

 Score = 35.1 bits (77), Expect = 0.047
 Identities = 31/113 (27%), Positives = 46/113 (40%), Gaps = 11/113 (9%)

Query: 8   VMMSCALLVQAYPYNPYYGNVDSLSYGSGDSNRGGLVMSRYYNPYY-NPRAVGG--GMAA 64
           +++SC +L  AYPY+  YGN D   Y              Y   Y  NP   GG  G   
Sbjct: 7   LVVSCGILAAAYPYSQQYGNYDQ-QYSQQSQYYPSSGQQGYRGGYQSNPGMQGGYQGNGQ 65

Query: 65  FMYRQPEAAQAPSTGQVYIPDRRRQTLADTSYVPQQENEVYYPQQPENPIFSP 117
             Y+  +  Q    GQ     R  Q      Y   Q ++  YP++ ++ ++SP
Sbjct: 66  DSYQDFQGYQGYQRGQG--GQRGYQ-----GYQSNQRSQGSYPERYDSSMYSP 111


>Z83223-4|CAB05716.2|  534|Caenorhabditis elegans Hypothetical
           protein E01G4.4 protein.
          Length = 534

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 4/61 (6%)

Query: 52  YYNPRAVGGGMAAFMYRQPEAAQAPSTGQVYIPDRRRQTLADTSYVPQQENEVYYPQQPE 111
           Y NP+A  G    +  +Q +    P     Y P R++Q     +Y P+Q+ +  Y QQ +
Sbjct: 27  YQNPQAGYG----YNNQQQQQQGRPQQYAGYPPQRQQQQYNMNAYAPRQQQQQQYQQQQQ 82

Query: 112 N 112
           N
Sbjct: 83  N 83


>AL132862-12|CAB60542.1|  380|Caenorhabditis elegans Hypothetical
           protein Y73F8A.17 protein.
          Length = 380

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/29 (41%), Positives = 14/29 (48%)

Query: 7   FVMMSCALLVQAYPYNPYYGNVDSLSYGS 35
           F M   A     YPY+PYY     L +GS
Sbjct: 311 FAMNQKASFANQYPYHPYYHQYSQLDHGS 339


>U23139-1|AAK31493.2|  513|Caenorhabditis elegans Hypothetical
           protein F13H8.5 protein.
          Length = 513

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 5/61 (8%)

Query: 69  QPEAAQAPSTGQVYIPDRRRQTLADTSYVPQQENEVYYPQQPE---NPIFSPTQATELAD 125
           Q +A Q P   Q + P +++Q +      PQQ   + Y QQP+    PI+S T     A 
Sbjct: 75  QFQAQQQPQQPQYFQPQQQQQPVQYQQQQPQQ--PLQYQQQPQPAPPPIYSQTVVIPQAP 132

Query: 126 P 126
           P
Sbjct: 133 P 133


>AF067613-12|AAN73861.1|  467|Caenorhabditis elegans Hypothetical
           protein F56D6.2 protein.
          Length = 467

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 17  QAYPYNPYYGNVDSLSYGSGDSNRGGLVMSRYYNPYYNPRAVGGGMAAFMYRQPEAAQAP 76
           QAY Y     N+   + G GDS  G  V+    N Y +P A G  +     R P      
Sbjct: 227 QAYSY--LSTNLPDSTLGFGDSTAGSNVLDVINNFYSSPSACGSVVMVLAKRYPNTTDIS 284

Query: 77  ST 78
           +T
Sbjct: 285 NT 286


>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
            protein Y40C5A.3 protein.
          Length = 2344

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/36 (36%), Positives = 18/36 (50%)

Query: 96   YVPQQENEVYYPQQPENPIFSPTQATELADPTEKIE 131
            YVPQ+      P  PE    +P+Q   + +PT  IE
Sbjct: 1812 YVPQETQAPIAPSNPEPVQPNPSQTVSIPEPTGNIE 1847


>Z74046-1|CAA98556.2|  178|Caenorhabditis elegans Hypothetical
           protein ZC116.1 protein.
          Length = 178

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 6/66 (9%)

Query: 48  YYNPYYN--PRAVGGGMAAFMYRQPEAAQAPSTGQVYIPDRRRQTLADTSYVPQQENEVY 105
           YY PYY   P A   G    + +Q +A  A          ++ Q  A  +   QQ+ + Y
Sbjct: 25  YYTPYYYYYPTAAVAGTTG-VAQQTQAGGASQQAYAQQQPQQNQQYAQGT---QQQQQQY 80

Query: 106 YPQQPE 111
           YPQQ +
Sbjct: 81  YPQQTQ 86


>U97196-12|AAB52456.2|  564|Caenorhabditis elegans Hypothetical
           protein B0207.1 protein.
          Length = 564

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 22/77 (28%), Positives = 30/77 (38%), Gaps = 3/77 (3%)

Query: 50  NPYYNPRAVGGGMAAFMYRQPEAAQAPSTGQVYIPDRRRQTLADTSYVPQQENEVYY--P 107
           NP  NP  +  G+       P   Q P    V  P   R    + + V Q +  V    P
Sbjct: 63  NPVQNPNKLSTGLPPMTMMLPPTVQEPLPTPVKTPPLPRPP-GNLNPVQQPQIPVQRTPP 121

Query: 108 QQPENPIFSPTQATELA 124
           Q P  P+  P Q T++A
Sbjct: 122 QCPPPPVPHPPQITQMA 138


>L13200-7|AAA28189.1|  206|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 96
           protein.
          Length = 206

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 98  PQQENEVYYPQQPENPIFSPTQATELA 124
           PQQ+   Y PQQP +PI     A  +A
Sbjct: 6   PQQQQPGYQPQQPSHPIVGAGAAPTMA 32


>Z93785-1|CAB07858.1|  495|Caenorhabditis elegans Hypothetical
           protein W09D10.1 protein.
          Length = 495

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/37 (37%), Positives = 18/37 (48%)

Query: 41  GGLVMSRYYNPYYNPRAVGGGMAAFMYRQPEAAQAPS 77
           G  V +   N   N +++GGG A F      AA APS
Sbjct: 231 GSFVSANSQNAQQNAQSLGGGFADFSSAPTTAAAAPS 267


>Z81568-3|CAB04592.1|  643|Caenorhabditis elegans Hypothetical
           protein K08E3.4 protein.
          Length = 643

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 11/93 (11%)

Query: 53  YNPRAVGGGMAAFMYRQPEAAQAPST----GQVYIPDRRRQTLADTSYVPQQE----NEV 104
           Y P A+   ++   Y +P A  AP T      V  P     T A + Y  Q +    +E 
Sbjct: 449 YKPEAMKPAVSYDAYEEPPAEPAPPTFLAPTPVIAPPPPEPTPAPSHYASQYDAPPVHES 508

Query: 105 YYPQQPENPIFSPTQ-ATELADPTEKIELYSTT 136
           + P  P  P+ +P+  A++   P E I+ +S++
Sbjct: 509 FEPAVP--PVSAPSHYASQYDAPPEPIDSHSSS 539


>Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical
           protein F12F6.6 protein.
          Length = 1126

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 70  PEAAQAPSTGQVYIPDRRRQTLADTSYVPQQENEVYYPQQPENPIFSPT 118
           P++ QAPS          +Q  A T  +PQ     + P QP + I  PT
Sbjct: 121 PQSVQAPSATPAGPLQAMQQAPAPTPGIPQMNQGAHLPPQP-HQIHQPT 168


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.317    0.134    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,106,094
Number of Sequences: 27539
Number of extensions: 189642
Number of successful extensions: 510
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 500
Number of HSP's gapped (non-prelim): 15
length of query: 248
length of database: 12,573,161
effective HSP length: 80
effective length of query: 168
effective length of database: 10,370,041
effective search space: 1742166888
effective search space used: 1742166888
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)