GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002564-TA|BGIBMGA002564-PA|undefined
         (263 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    27   2.8  
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    27   3.7  
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    27   3.7  
SPCC16C4.17 |mug123||meiotically upregulated gene Mug123|Schizos...    26   4.8  
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   8.5  

>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 78  SDGPAYASGIGIANTGVQPQQYYRTYNVQPAVYRPAPTYTSYQPAIYNTGYYRDQGSAIA 137
           SD  AY +G+G+A+T +     Y T      + +  PT   + P  +N G      +A+A
Sbjct: 297 SDTQAYKTGLGLASTTMGIMFAYAT-KTWHLIEKNLPTQVGFLPIPWNGGSNTYSPTALA 355

Query: 138 S 138
           +
Sbjct: 356 A 356


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 118 SYQPAIYNTGYYRDQGSAIASAQNLNNY 145
           S QP  Y    Y D  +A ++ +NLNNY
Sbjct: 42  SGQPKGYGFCEYHDPATAASAVRNLNNY 69


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 30/155 (19%), Positives = 56/155 (36%), Gaps = 6/155 (3%)

Query: 72  GGGFANSDGPAYASGIGIANTGVQPQQYYRTYNVQP-----AVYRPAPTYTSYQPAIYNT 126
           GG  +  DGP  AS    + TG  P    ++ ++       A YRP P+         N 
Sbjct: 263 GGNGSYFDGPLTASPTPSSPTGT-PNSMSKSPSLSSLASTGASYRPGPSKPLVSRVRDNY 321

Query: 127 GYYRDQGSAIASAQNLNNYGTXXXXXXXXXXXXXXXXTVSNLRGLGYGSVASATANDGFG 186
                +    ++  ++  Y                    +N    GY   +S  ++D  G
Sbjct: 322 ANTSYESWPHSTEFDMFTYAVSGSLKLTPQGTGFDCINPANPFSPGYSGKSSMKSDDNVG 381

Query: 187 TVISSADSRGTAISSAQTRDGQGDYSNVVSAAQNI 221
           +  ++A +  T+ +S++   G G  +  +    NI
Sbjct: 382 SSANTAPNSPTSANSSEGNQGNGPTTYPIKPPTNI 416


>SPCC16C4.17 |mug123||meiotically upregulated gene
           Mug123|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 235

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 10/118 (8%)

Query: 76  ANSDGPAYASGIGIANTGVQPQQYYRTYNVQPAVYRP---APTYTSYQPAIYNT-GYYRD 131
           ++ +G + + G+G   + V   Q++  Y+ +PA       AP +T   P +  T G   D
Sbjct: 68  SSQNGKSSSKGLGGMRSRVFSSQHHGVYHTRPASLHSRTMAPQHTILTPRLSATEGKDDD 127

Query: 132 QGSAIASAQNLNNYGTXXXXXXXXXXXXXXXXTVSNLRGLGY----GSVASATANDGF 185
           +   + S    N   T                T  ++ G+       S A  T +DGF
Sbjct: 128 EDELVISTS--NTAPTYISMIESSRASSTHSGTAPSIMGMSIHSRADSRAETTQSDGF 183


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 4/52 (7%)

Query: 73  GGFANSDGPAYASGIGIANTGVQPQQYYRTYNVQPAVYRPAPTYTSYQPAIY 124
           G    + G  Y + +  AN+ +     Y++Y+V P  +     Y S  PA+Y
Sbjct: 432 GNAPAAPGTMYTTPLPTANSPIA----YQSYSVMPTYWSFPQNYDSTVPAVY 479


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.131    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 933,644
Number of Sequences: 5004
Number of extensions: 31068
Number of successful extensions: 46
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 44
Number of HSP's gapped (non-prelim): 5
length of query: 263
length of database: 2,362,478
effective HSP length: 71
effective length of query: 192
effective length of database: 2,007,194
effective search space: 385381248
effective search space used: 385381248
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 53 (25.4 bits)