GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002564-TA|BGIBMGA002564-PA|undefined
         (263 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0500 + 21470681-21470952,21471049-21471089,21472322-214724...    30   1.7  
10_08_0230 + 16023569-16024177                                         30   2.2  
10_08_0224 - 15993497-15994075                                         30   2.2  
03_05_0373 + 23581812-23583293                                         29   2.9  
10_08_0233 - 16061182-16061714,16062765-16063578                       29   5.0  
08_02_0345 - 16057614-16057654,16057797-16057949,16058165-160582...    29   5.0  
08_02_0351 - 16138147-16138187,16138328-16138480,16138684-161387...    28   8.8  

>06_03_0500 +
           21470681-21470952,21471049-21471089,21472322-21472485,
           21472577-21472679,21472806-21472975,21473766-21474239
          Length = 407

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 22/71 (30%), Positives = 25/71 (35%), Gaps = 3/71 (4%)

Query: 65  TGNAEAYGGGFANSDGPAYASGIGIANTGVQPQQYYRTYNVQPAVYRPAPTYTSYQPAIY 124
           TG A  YG G+     PA+ SG G    G      Y  Y      Y     Y +  P  Y
Sbjct: 318 TGYA-GYGRGYGYGGNPAFGSGFGSGYGGSMYGGPYGAYGAYGGAYGGGGAYGA--PGGY 374

Query: 125 NTGYYRDQGSA 135
             G Y   G A
Sbjct: 375 GAGGYGAYGGA 385


>10_08_0230 + 16023569-16024177
          Length = 202

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/35 (34%), Positives = 18/35 (51%)

Query: 66  GNAEAYGGGFANSDGPAYASGIGIANTGVQPQQYY 100
           GN + YGGG++ S G     G G  ++ V    +Y
Sbjct: 129 GNGDGYGGGYSGSSGYGSGFGTGGGSSAVAMDGFY 163


>10_08_0224 - 15993497-15994075
          Length = 192

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 65 TGNAEAYGGGFANSDGPAYASGIGIANTG 93
          TG+    GGG+ N  G    SG G+A +G
Sbjct: 34 TGSGGGNGGGYLNGGGVGSGSGYGVATSG 62


>03_05_0373 + 23581812-23583293
          Length = 493

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 16/43 (37%), Positives = 24/43 (55%)

Query: 175 SVASATANDGFGTVISSADSRGTAISSAQTRDGQGDYSNVVSA 217
           S ASA+ +    +  S++D  G + SS QT DG G Y +  S+
Sbjct: 22  SAASASFSPKSFSSSSASDDDGCSSSSWQTNDGAGGYGSAASS 64


>10_08_0233 - 16061182-16061714,16062765-16063578
          Length = 448

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/29 (41%), Positives = 15/29 (51%)

Query: 65  TGNAEAYGGGFANSDGPAYASGIGIANTG 93
           TG     GGG+ N  G  + SG G A +G
Sbjct: 288 TGAGGGGGGGYLNGGGSGFGSGAGSAQSG 316


>08_02_0345 -
           16057614-16057654,16057797-16057949,16058165-16058263,
           16058395-16058413
          Length = 103

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 70  AYGGGFANSDGPAYASGIGIANTGVQPQQYYRTYNVQPA---VYRPAPTYTSYQPAIYNT 126
           +YGG  + S   +Y +G   + TG  P Q Y  Y  + A    Y      +S    +   
Sbjct: 24  SYGGNNSQSTASSYHNGSSKSTTGRVPAQQYSDYKSKTADQYSYYYNSISSSQGQQLGGA 83

Query: 127 GYYRDQGS 134
           GYY  Q S
Sbjct: 84  GYYDKQPS 91


>08_02_0351 -
           16138147-16138187,16138328-16138480,16138684-16138778,
           16139683-16139764,16142564-16142639,16143448-16143563,
           16144260-16144349,16144438-16144453
          Length = 222

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/39 (33%), Positives = 19/39 (48%)

Query: 70  AYGGGFANSDGPAYASGIGIANTGVQPQQYYRTYNVQPA 108
           +YGG  + S   +Y +G   + TG  P Q Y  Y  + A
Sbjct: 143 SYGGNNSQSTASSYHNGSSKSTTGRVPAQQYSDYKSKTA 181


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.314    0.131    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,259,709
Number of Sequences: 37544
Number of extensions: 220360
Number of successful extensions: 545
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 531
Number of HSP's gapped (non-prelim): 15
length of query: 263
length of database: 14,793,348
effective HSP length: 81
effective length of query: 182
effective length of database: 11,752,284
effective search space: 2138915688
effective search space used: 2138915688
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 59 (27.9 bits)