GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002563-TA|BGIBMGA002563-PA|undefined
         (125 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-67|AAN13306.3|  642|Drosophila melanogaster CG1090-PB, ...    29   2.3  

>AE014297-67|AAN13306.3|  642|Drosophila melanogaster CG1090-PB,
          isoform B protein.
          Length = 642

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 9/26 (34%), Positives = 17/26 (65%)

Query: 2  MWRAGIVVIVYITVALQQSFADSKDG 27
          MW  G++ ++Y  V++  +  D+KDG
Sbjct: 12 MWNMGLLFLIYYCVSIYSAKGDTKDG 37


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.318    0.132    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,604,005
Number of Sequences: 52641
Number of extensions: 47648
Number of successful extensions: 41
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40
Number of HSP's gapped (non-prelim): 1
length of query: 125
length of database: 24,830,863
effective HSP length: 77
effective length of query: 48
effective length of database: 20,777,506
effective search space: 997320288
effective search space used: 997320288
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)