GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002563-TA|BGIBMGA002563-PA|undefined
         (125 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80454-4|AAB37876.3|  896|Caenorhabditis elegans Prion-like-(q/n...    26   6.9  

>U80454-4|AAB37876.3|  896|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 66
           protein.
          Length = 896

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 7   IVVIVYITVALQQSFADSKDGVENGLLLQRLK 38
           I+V+ YI   +Q+ F     G E+G + ++LK
Sbjct: 130 IMVMCYIAHVMQKKFLGKDSGYEDGEVYEKLK 161


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.318    0.132    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,291,631
Number of Sequences: 27539
Number of extensions: 23487
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 1
length of query: 125
length of database: 12,573,161
effective HSP length: 73
effective length of query: 52
effective length of database: 10,562,814
effective search space: 549266328
effective search space used: 549266328
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)