GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002562-TA|BGIBMGA002562-PA|undefined
         (423 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces pom...    29   1.6  
SPCC1827.02c |||cholinephosphate cytidylyltransferase |Schizosac...    27   3.8  

>SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 11/99 (11%)

Query: 318 VDSVAHKIKGVDLVALKSRVLALVLQTLKLKAHTGTVVDLVLVTMMADFL-----VKLNN 372
           +D  A K+K  D+  L  +    +    ++K   G++  LVL  +  + +      KL +
Sbjct: 197 IDIYAKKVKDEDVSLLMEKNTLKI----EIKLEDGSIFSLVLDPLYEEIVPEKSSFKLFS 252

Query: 373 SK--LTLVLKAAAFLKEAMVRSVNNINRNHRAVDSGNKA 409
           SK  +TL+ K +    EA+V+S  N + N  A DS + +
Sbjct: 253 SKVEITLIKKVSEIKWEALVKSPANNSVNVYAKDSNHSS 291


>SPCC1827.02c |||cholinephosphate cytidylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 354

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 13/39 (33%), Positives = 25/39 (64%), Gaps = 2/39 (5%)

Query: 304 KAKEVVSVIHVVKGV--DSVAHKIKGVDLVALKSRVLAL 340
           +AK+V   +H++ G+  D + H++KG+ ++  K R  AL
Sbjct: 115 QAKKVFPNVHLIVGLPNDQLTHRLKGLTVMNDKERAEAL 153


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.131    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,185,284
Number of Sequences: 5004
Number of extensions: 36462
Number of successful extensions: 69
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 69
Number of HSP's gapped (non-prelim): 2
length of query: 423
length of database: 2,362,478
effective HSP length: 75
effective length of query: 348
effective length of database: 1,987,178
effective search space: 691537944
effective search space used: 691537944
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)