GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002562-TA|BGIBMGA002562-PA|undefined
         (423 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   6.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   8.5  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 6.4
 Identities = 15/62 (24%), Positives = 28/62 (45%)

Query: 354 VVDLVLVTMMADFLVKLNNSKLTLVLKAAAFLKEAMVRSVNNINRNHRAVDSGNKAVDMG 413
           ++DL    +M    + L+ +  T  L  A    +  + S +N+N N    ++ + A D  
Sbjct: 496 LLDLCTKFLMHKDSLGLSTATSTCSLAVAKQQNQVPLTSSSNVNNNSGNGNTNSSARDSS 555

Query: 414 PA 415
           PA
Sbjct: 556 PA 557


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 385 LKEAMVRSVNNINRNHRAVDSGNKAVD 411
           L E  +R +N+I  N R  D G+   D
Sbjct: 178 LTENRLRDINDIGLNRRDSDDGSDGND 204


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.131    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,065
Number of Sequences: 429
Number of extensions: 2351
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 2
length of query: 423
length of database: 140,377
effective HSP length: 60
effective length of query: 363
effective length of database: 114,637
effective search space: 41613231
effective search space used: 41613231
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)