GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002560-TA|BGIBMGA002560-PA|undefined
         (171 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    29   0.49 
SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|ch...    28   0.86 
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc...    27   2.0  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   2.6  
SPBC3E7.13c |||splicing factor, SYF2 family|Schizosaccharomyces ...    26   3.5  
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c...    26   3.5  
SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyce...    26   3.5  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    25   4.6  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    25   8.0  

>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 28.7 bits (61), Expect = 0.49
 Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 7/99 (7%)

Query: 21  RISENMHIVANEPSLALYRLQEHVRKALPPMVERRVEVT-KLQYE------LQGRCYDVE 73
           R+  N H    E +  L   +E + + L   +ER+  +  K   E      L  R  ++E
Sbjct: 8   RVKPNQHPYEKEVNGKLMSQEEILSQKLVAAIERQAALDDKYATEVHRNEALSERIRELE 67

Query: 74  YALSAVKSMDGAATSFKNIQEMLKQCIFLKQQLKYEESR 112
             LSA KS D     F N++E L+      +  + E+SR
Sbjct: 68  AKLSAKKSFDEELVKFHNLEEKLQLTETKCRNAESEKSR 106


>SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 27.9 bits (59), Expect = 0.86
 Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 31  NEPSLALYRLQEHVRKALPPMVERR-VEVTKLQYELQGRCYD-VEYALSAVKSMDGAATS 88
           N+ SLAL + +  V +AL  + ERR + ++K ++ +   CY  + Y   A       AT 
Sbjct: 204 NDNSLALQKSKVFVNRALLTLPERRSLNLSKSEFVVSLACYILLVYTEIAFADTTEWATY 263

Query: 89  FKNIQEMLKQ 98
           F N   M+ +
Sbjct: 264 FLNAYNMINK 273


>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
          Pre5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 272

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 2/22 (9%)

Query: 66 QGRCYDVEYALSAVKSMDGAAT 87
          QGR + VEYAL A+K   G+AT
Sbjct: 16 QGRLHQVEYALEAIK--QGSAT 35


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 11/29 (37%), Positives = 20/29 (68%)

Query: 80   KSMDGAATSFKNIQEMLKQCIFLKQQLKY 108
            K +  +AT +KN+Q++LK+  F+ + L Y
Sbjct: 3240 KLLGFSATDWKNVQQLLKRDDFIPKILNY 3268


>SPBC3E7.13c |||splicing factor, SYF2 family|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 229

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 10/25 (40%), Positives = 17/25 (68%)

Query: 40 LQEHVRKALPPMVERRVEVTKLQYE 64
          +QEH R  + P +ERR+E  +++ E
Sbjct: 34 VQEHSRMRIDPALERRLERKRMEAE 58


>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 27/120 (22%), Positives = 46/120 (38%), Gaps = 6/120 (5%)

Query: 25  NMHIVA--NEPSLALYR---LQEHVRKALPPMVERRVEVTKLQYELQGRCYDVEYALSAV 79
           NM +V   NE +LAL R    QE V K +   +E+  E    QY  +       +  +  
Sbjct: 286 NMRLVEGHNEETLALQRGKYTQEEVDKLIQERMEKVAEDLHAQYSAKHTQKINAFKANYA 345

Query: 80  KSMDGAATSFKNIQEMLKQCIFLKQQLKYEESRRNKKDSNSVYKRLSAHIVLDLPDLSEF 139
           +  +      +N          +     +EE RR  K  N   ++     + +  D+S+F
Sbjct: 346 RKYEATIQELQNQIGTAPNAPKISNS-NWEEERRALKADNQTLQKQLEKAIQERQDMSDF 404


>SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 210

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 17/83 (20%), Positives = 43/83 (51%), Gaps = 4/83 (4%)

Query: 45  RKALPPMVERRVEVTKLQYELQGRCYDVEYALSAVKSMDGAATSFKNIQEMLKQCIFLKQ 104
           ++A+  + ++++  ++LQ +LQ + +++E A    +S+     + + +QE  +Q   LK 
Sbjct: 63  QRAMNVLRQKKIYESQLQ-QLQQQSFNMEQAAMTTESLKNTMATVQTMQETARQ---LKS 118

Query: 105 QLKYEESRRNKKDSNSVYKRLSA 127
           Q K     + +K  + +   + A
Sbjct: 119 QSKNVSIEKIEKLQDEIQDYMDA 141


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 6/126 (4%)

Query: 10  ELETXXXXXXERISENMHIVANEPSLALYRLQEHVRKALPPMVERRVEVTKLQYELQGRC 69
           EL +      ++ +E  H+  +   L  Y L   +RK LP ++   V +++L  +     
Sbjct: 789 ELVSVFFAGLQKWNEACHVSIHSLMLCCYELPVSIRKQLPAIL---VTLSRLITKPDLSV 845

Query: 70  YDVEYALSAVKSMDGAATSFKNIQEMLKQCIFLK--QQLKYEESRRNKKDSNSVYKRLSA 127
           + +E+  S  +  D  A +F +        I LK  Q   + +  ++  D+ S+ K   +
Sbjct: 846 HILEFLCSLARLPDLIA-NFTDADYRQIFAIALKYIQHRDFTKESKDSNDTESILKNSYS 904

Query: 128 HIVLDL 133
             VL L
Sbjct: 905 SYVLAL 910


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2310

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 74  YALSAVKSMDGAAT--SFKNIQEMLKQCIFLKQQLKYEESRRNKKDSNSVYKRLS 126
           Y L+  +S D      S++   E+LK C+FL  +  +      +KD  S++  L+
Sbjct: 800 YILALKESADALMQFGSYEYATELLKSCLFLLPRNFWNSKLYTRKDLISIHISLA 854


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.129    0.352 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 673,863
Number of Sequences: 5004
Number of extensions: 24452
Number of successful extensions: 89
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 85
Number of HSP's gapped (non-prelim): 9
length of query: 171
length of database: 2,362,478
effective HSP length: 68
effective length of query: 103
effective length of database: 2,022,206
effective search space: 208287218
effective search space used: 208287218
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)