Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002560-TA|BGIBMGA002560-PA|undefined
(171 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0339 - 3003626-3004070,3004467-3004636,3004907-3005020,300... 36 0.017
07_03_1567 - 27772815-27773302,27773471-27773561,27773641-277739... 29 1.5
03_05_0510 + 25039408-25039455,25040627-25040641,25040832-250409... 29 2.6
03_06_0678 - 35480711-35484658 28 3.5
01_01_0717 - 5559414-5559435,5559589-5559764,5559876-5559917,556... 28 3.5
09_03_0096 + 12328116-12329561,12329810-12329852,12332119-123322... 28 4.6
07_03_1424 - 26474464-26474514,26474549-26474635,26474905-264750... 28 4.6
05_02_0017 - 5617052-5617492 28 4.6
03_02_1011 + 13198641-13198899,13199471-13199604,13199805-131999... 27 6.1
09_04_0721 + 19725695-19725697,19725793-19725859,19725944-197260... 27 8.0
07_01_0877 - 7276300-7276967,7277050-7277173 27 8.0
>08_01_0339 -
3003626-3004070,3004467-3004636,3004907-3005020,
3005592-3005704,3005848-3005926
Length = 306
Score = 35.9 bits (79), Expect = 0.017
Identities = 19/75 (25%), Positives = 43/75 (57%), Gaps = 5/75 (6%)
Query: 22 ISENMHIVANEPSLALYRLQEHVRKALPPMVERRVEVTKLQYELQGRCYDVEYALSAVKS 81
+ E + VANEPS+ LY +Q+H + ++P +++ + +V + + + +Y + +K
Sbjct: 31 VDEMIKYVANEPSVGLYFVQQHAQASMPLLLDVKGQVGIAGHIICVKQVFYQYIVQQLK- 89
Query: 82 MDGAATSFKNIQEML 96
+S+KN++E +
Sbjct: 90 ----GSSYKNMEEQM 100
>07_03_1567 -
27772815-27773302,27773471-27773561,27773641-27773988,
27774929-27775110,27775191-27775368,27775453-27775605,
27775993-27776232,27776369-27776449,27776485-27776730,
27777151-27777240,27777536-27777778,27778365-27778529,
27779017-27779080,27779162-27779286,27779383-27779476,
27779647-27779714,27779798-27779989,27780618-27780752,
27780847-27780934,27781014-27781107,27781484-27781547,
27781657-27781708,27781911-27782014,27782099-27782158,
27782687-27782770,27782892-27783125,27783442-27783864,
27784675-27784736,27784867-27785521
Length = 1700
Score = 29.5 bits (63), Expect = 1.5
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 37 LYRLQEHVRKALPPMVER--RVEVTKLQYELQGRCYDVEYALSAVKSMDGAATSFKNIQE 94
L R+ + V K+LPP +ER RV+++ LQ + + + + K + G S NI
Sbjct: 816 LRRVIKDVEKSLPPKIERILRVDMSPLQKQYYKWILERNFQ-NLNKGVRGNQVSLLNIVV 874
Query: 95 MLKQC 99
LK+C
Sbjct: 875 ELKKC 879
>03_05_0510 +
25039408-25039455,25040627-25040641,25040832-25040991,
25041116-25041192,25041324-25042528,25042537-25042621,
25043068-25043130,25043207-25043263,25043299-25043361,
25043560-25043643,25043730-25044320,25044535-25044663
Length = 858
Score = 28.7 bits (61), Expect = 2.6
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 67 GRCYDVEYALSAVKSMDGAATSFKNIQEMLKQCIFLKQQLKYE-ESRRNKKDSNSVYKRL 125
GR +D SA S+DG T ++QE +Q + L+ +L+ E NK SN KR
Sbjct: 229 GRHHDASKEASAA-SLDGYNTEV-SVQEEQQQRLRLRLRLRQRREQEDNKSTSNGKRKRE 286
Query: 126 SAHIVLD 132
A +D
Sbjct: 287 EAESSMD 293
>03_06_0678 - 35480711-35484658
Length = 1315
Score = 28.3 bits (60), Expect = 3.5
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 78 AVKSMDGAATSFKNIQEMLKQCIFLKQQLKYEESRRNKKDSNSVYKRLSAHIVLDL 133
A K +GA + ++++ Q + + KYE RR K + YK+L + +V+ L
Sbjct: 53 AAKHREGAKAWLEELRKVAYQANDVFDEFKYEALRRKAK-AKGHYKKLGSIVVIKL 107
>01_01_0717 -
5559414-5559435,5559589-5559764,5559876-5559917,
5560039-5560080,5560268-5560370,5560466-5560527,
5561638-5561719,5567067-5567353,5568085-5568184,
5568584-5568651,5569819-5569860,5570001-5570032,
5572616-5572652
Length = 364
Score = 28.3 bits (60), Expect = 3.5
Identities = 29/120 (24%), Positives = 50/120 (41%), Gaps = 2/120 (1%)
Query: 44 VRKALPPMVERRVEVTKLQYELQGRCYDVEYALSAVKSMDGAATSFKNIQEMLKQCIFLK 103
++KA V EV + + +GR Y EYA ++VKS + +
Sbjct: 157 LKKAYELSVLCDAEVALIVFSSRGRLY--EYANNSVKSTVERYKKANSDTSNSGTVAEVN 214
Query: 104 QQLKYEESRRNKKDSNSVYKRLSAHIVLDLPDLSEFSMVRETTNRIENMMAHARGSSAEL 163
Q +ES + ++ +S+ S IV D + +++ NR+E +A R EL
Sbjct: 215 AQHYQQESSKLRQQISSLQNANSRTIVGDSINTMSLRDLKQVENRLEKGIAKIRARKNEL 274
>09_03_0096 +
12328116-12329561,12329810-12329852,12332119-12332237,
12333326-12333853
Length = 711
Score = 27.9 bits (59), Expect = 4.6
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 30 ANEPSLALYRLQEHVRKALPPMVERRVEVTKLQYELQGRCY 70
A E +LAL + R++ ERR+E + + E++ RC+
Sbjct: 545 AKEENLALAEQEHAKRESAKANAERRLEEIRQKTEVESRCF 585
>07_03_1424 -
26474464-26474514,26474549-26474635,26474905-26475006,
26475149-26475260,26475405-26475463,26475559-26475633,
26475734-26475832,26476128-26476343,26476426-26476500,
26476583-26476670,26476757-26476902,26477240-26477347,
26477417-26478436,26478437-26478715,26479471-26480520,
26480636-26480692,26480780-26480837,26481379-26481458,
26481598-26481654,26481764-26481833,26481967-26482202,
26482341-26482445,26482534-26482680,26482758-26482823,
26482916-26482979,26484040-26484200,26484308-26484400,
26484487-26484600,26484684-26484803,26484893-26484976,
26485061-26485216,26485389-26485811
Length = 1885
Score = 27.9 bits (59), Expect = 4.6
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 38 YRLQEHVRKALPPMVERRVEVTKLQYELQ 66
+ + EHV KA+ +E+ +++LQ ELQ
Sbjct: 913 HSVSEHVEKAMKVSIEKEKIISRLQIELQ 941
>05_02_0017 - 5617052-5617492
Length = 146
Score = 27.9 bits (59), Expect = 4.6
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 31 NEPSLALYRLQEHVRKALPPMVERRVEVTKLQYELQGRCYDVE 73
NEP A +R + +L P E + E T L YE Y+ E
Sbjct: 17 NEPICARFRELKRANPSLVPSPEEKDEYTMLLYECTRESYEDE 59
>03_02_1011 +
13198641-13198899,13199471-13199604,13199805-13199934,
13200290-13200450,13200587-13200688,13200786-13200890,
13200965-13201093,13201180-13201320,13201855-13201955,
13202300-13202357,13202656-13202943
Length = 535
Score = 27.5 bits (58), Expect = 6.1
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 10 ELETXXXXXXERISENMHIVANEPSLALYRLQEHVRKA 47
ELE R+S N +++ E L L LQ+H ++A
Sbjct: 96 ELEFFREELQSRLSNNYNVILKERKLPLSLLQDHQKQA 133
>09_04_0721 +
19725695-19725697,19725793-19725859,19725944-19726044,
19726780-19726824,19727052-19727522,19727972-19728142
Length = 285
Score = 27.1 bits (57), Expect = 8.0
Identities = 14/55 (25%), Positives = 30/55 (54%)
Query: 71 DVEYALSAVKSMDGAATSFKNIQEMLKQCIFLKQQLKYEESRRNKKDSNSVYKRL 125
D Y + V + +A+S +N+ ++K+C+ + Y +R+N S+S ++L
Sbjct: 202 DGGYDILLVNEIPYSASSLQNLYLLVKKCLRPPYGVMYLAARKNYIGSSSAVRQL 256
>07_01_0877 - 7276300-7276967,7277050-7277173
Length = 263
Score = 27.1 bits (57), Expect = 8.0
Identities = 10/29 (34%), Positives = 20/29 (68%)
Query: 38 YRLQEHVRKALPPMVERRVEVTKLQYELQ 66
Y+LQ+ V+K + + E V+V +L Y+++
Sbjct: 23 YKLQKGVKKEIESLQEEYVDVRELSYDIE 51
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.129 0.352
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,105,562
Number of Sequences: 37544
Number of extensions: 137786
Number of successful extensions: 412
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 405
Number of HSP's gapped (non-prelim): 11
length of query: 171
length of database: 14,793,348
effective HSP length: 77
effective length of query: 94
effective length of database: 11,902,460
effective search space: 1118831240
effective search space used: 1118831240
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)
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