GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002560-TA|BGIBMGA002560-PA|undefined
         (171 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskel...    25   1.7  
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    24   2.2  
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    23   6.7  

>CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskeletal
            structural protein protein.
          Length = 1645

 Score = 24.6 bits (51), Expect = 1.7
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 111  SRRNKKDSNSVYKRLSAHIVLDLPDLSEF-SMVRETTNRIENMMAHARGSSAELHRSHTT 169
            SR+N  DSNSV    S + V  +    EF  M R   +R E+ + ++      LH  H  
Sbjct: 1266 SRKNSADSNSVATHSSYYSVTGVEPEKEFVVMPRLPPSRSEDTL-NSSHLHHHLHHGHHH 1324

Query: 170  LH 171
             H
Sbjct: 1325 HH 1326


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 24.2 bits (50), Expect = 2.2
 Identities = 15/49 (30%), Positives = 20/49 (40%)

Query: 107 KYEESRRNKKDSNSVYKRLSAHIVLDLPDLSEFSMVRETTNRIENMMAH 155
           K  E +    D NS  + L A+   D PD        E  + IE + AH
Sbjct: 770 KLAEVKAKSSDKNSTARALCANKTPDKPDFPYRKEFTELPDTIELVDAH 818


>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 22.6 bits (46), Expect = 6.7
 Identities = 11/38 (28%), Positives = 19/38 (50%)

Query: 37  LYRLQEHVRKALPPMVERRVEVTKLQYELQGRCYDVEY 74
           L  L   +R+ + P +E+  +  +   E Q  C D+EY
Sbjct: 192 LNELYAVIREEIEPKLEKLRKEREHYIEFQKVCRDIEY 229


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.317    0.129    0.352 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,217
Number of Sequences: 2123
Number of extensions: 4851
Number of successful extensions: 40
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37
Number of HSP's gapped (non-prelim): 3
length of query: 171
length of database: 516,269
effective HSP length: 60
effective length of query: 111
effective length of database: 388,889
effective search space: 43166679
effective search space used: 43166679
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)