GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002560-TA|BGIBMGA002560-PA|undefined
         (171 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   4.9  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   6.5  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 11/48 (22%), Positives = 24/48 (50%)

Query: 76  LSAVKSMDGAATSFKNIQEMLKQCIFLKQQLKYEESRRNKKDSNSVYK 123
           LS+  S DG  +S  ++   + + ++ +     +ES  +   S+ +YK
Sbjct: 918 LSSCVSNDGGCSSLVDVSTPVNKKVYKQNDYIVDESSSSSFYSSFLYK 965


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 8/19 (42%), Positives = 13/19 (68%)

Query: 108 YEESRRNKKDSNSVYKRLS 126
           YE + R +K +  +Y+RLS
Sbjct: 214 YETNDRKEKLATGIYQRLS 232


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.129    0.352 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,983
Number of Sequences: 429
Number of extensions: 1546
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 171
length of database: 140,377
effective HSP length: 54
effective length of query: 117
effective length of database: 117,211
effective search space: 13713687
effective search space used: 13713687
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 41 (20.6 bits)