GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002559-TA|BGIBMGA002559-PA|IPR000608|Ubiquitin-
conjugating enzyme, E2
         (151 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   1.1  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    20   8.0  
AJ850297-1|CAH64517.1|  539|Tribolium castaneum putative esteras...    20   8.0  
AJ850295-1|CAH64515.1|  539|Tribolium castaneum putative esteras...    20   8.0  
AJ850294-1|CAH64514.1|  539|Tribolium castaneum putative esteras...    20   8.0  
AJ850293-1|CAH64513.1|  539|Tribolium castaneum putative esteras...    20   8.0  
AJ850292-1|CAH64512.1|  539|Tribolium castaneum putative esteras...    20   8.0  
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    20   8.0  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 9/26 (34%), Positives = 11/26 (42%)

Query: 95  WSPALQIRTVLLSIQALLSAPNPDDP 120
           WSPA          +   +AP P DP
Sbjct: 108 WSPAATAAATATEYKYSAAAPGPSDP 133


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 10/33 (30%), Positives = 13/33 (39%)

Query: 113 SAPNPDDPLANDVAELWKVNESEAIRNAKEWTR 145
           S+P P D L         VN+    R    +TR
Sbjct: 48  SSPTPSDKLNTSTTSSVNVNDQNIRRYRTAFTR 80


>AJ850297-1|CAH64517.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 8/25 (32%), Positives = 12/25 (48%)

Query: 16  MQEPVPGISAVPSETNARYFHVIVT 40
           +Q P+PG   V  + N  Y  +  T
Sbjct: 82  IQHPLPGQDYVIGQENCLYLTIYTT 106


>AJ850295-1|CAH64515.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 8/25 (32%), Positives = 12/25 (48%)

Query: 16  MQEPVPGISAVPSETNARYFHVIVT 40
           +Q P+PG   V  + N  Y  +  T
Sbjct: 82  IQHPLPGQDYVIGQENCLYLTIYTT 106


>AJ850294-1|CAH64514.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 8/25 (32%), Positives = 12/25 (48%)

Query: 16  MQEPVPGISAVPSETNARYFHVIVT 40
           +Q P+PG   V  + N  Y  +  T
Sbjct: 82  IQHPLPGQDYVIGQENCLYLTIYTT 106


>AJ850293-1|CAH64513.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 8/25 (32%), Positives = 12/25 (48%)

Query: 16  MQEPVPGISAVPSETNARYFHVIVT 40
           +Q P+PG   V  + N  Y  +  T
Sbjct: 82  IQHPLPGQDYVIGQENCLYLTIYTT 106


>AJ850292-1|CAH64512.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 8/25 (32%), Positives = 12/25 (48%)

Query: 16  MQEPVPGISAVPSETNARYFHVIVT 40
           +Q P+PG   V  + N  Y  +  T
Sbjct: 82  IQHPLPGQDYVIGQENCLYLTIYTT 106


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 5/16 (31%), Positives = 12/16 (75%)

Query: 79  NIDRLGRICLDILKDK 94
           ++D +G +C  +++DK
Sbjct: 158 DVDLIGNVCSYVVRDK 173


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.134    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,690
Number of Sequences: 317
Number of extensions: 1052
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 151
length of database: 114,650
effective HSP length: 52
effective length of query: 99
effective length of database: 98,166
effective search space:  9718434
effective search space used:  9718434
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.3 bits)
S2: 40 (20.2 bits)