Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002559-TA|BGIBMGA002559-PA|IPR000608|Ubiquitin-
conjugating enzyme, E2
(151 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin co... 231 2e-61
Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical pr... 127 3e-30
S56051-1|AAB25489.2| 147|Caenorhabditis elegans ubiquitin-conju... 127 3e-30
U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein. 109 1e-24
AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin con... 109 1e-24
AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin co... 91 2e-19
AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical... 85 2e-17
U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin conju... 85 2e-17
Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical p... 82 2e-16
U39674-5|AAA80415.2| 229|Caenorhabditis elegans Ubiquitin conju... 80 8e-16
AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin co... 71 3e-13
AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin con... 69 1e-12
U70849-3|AAK67232.1| 166|Caenorhabditis elegans Ubiquitin conju... 68 3e-12
AF106565-1|AAC97374.1| 166|Caenorhabditis elegans ubiquitin-con... 68 3e-12
U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin conju... 64 5e-11
AL032653-6|CAA21716.1| 152|Caenorhabditis elegans Hypothetical ... 64 5e-11
AC024748-1|AAF60411.2| 218|Caenorhabditis elegans Ubiquitin con... 55 2e-08
Z66520-3|CAA91389.2| 160|Caenorhabditis elegans Hypothetical pr... 54 6e-08
AC024747-1|AAO21404.1| 203|Caenorhabditis elegans Ubiquitin con... 52 1e-07
Z81108-2|CAB03238.1| 180|Caenorhabditis elegans Hypothetical pr... 49 2e-06
U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin conju... 46 2e-05
U23517-9|AAB93334.2| 314|Caenorhabditis elegans Ubiquitin conju... 41 3e-04
U13644-3|AAB52677.1| 230|Caenorhabditis elegans Ubiquitin e2 (c... 41 3e-04
Z81516-5|CAB04202.1| 219|Caenorhabditis elegans Hypothetical pr... 31 0.27
Z92834-2|CAB07383.1| 139|Caenorhabditis elegans Hypothetical pr... 29 1.4
Z54342-15|CAK55172.1| 465|Caenorhabditis elegans Hypothetical p... 28 2.5
AL032655-1|CAA21726.1| 995|Caenorhabditis elegans Hypothetical ... 28 3.3
>AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein13 protein.
Length = 151
Score = 231 bits (564), Expect = 2e-61
Identities = 106/145 (73%), Positives = 120/145 (82%)
Query: 4 LPRRIIKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYP 63
LPRRIIKETQRL+ +PVPGISA P E+NARYFHV++ GP+DS +YP
Sbjct: 5 LPRRIIKETQRLLADPVPGISANPDESNARYFHVMIAGPDDSPFAGGVFKLELFLPEEYP 64
Query: 64 MSAPKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLAN 123
M+APKVRF+TKIYHPNID+LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNP+DPLA
Sbjct: 65 MAAPKVRFMTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPEDPLAT 124
Query: 124 DVAELWKVNESEAIRNAKEWTRRYA 148
DVAE WK NE+EAI+ AK+WT YA
Sbjct: 125 DVAEQWKTNEAEAIKTAKQWTMNYA 149
>Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical
protein M7.1 protein.
Length = 147
Score = 127 bits (307), Expect = 3e-30
Identities = 63/144 (43%), Positives = 85/144 (59%)
Query: 6 RRIIKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 65
+RI KE Q L ++P SA P + ++ + GP +S DYP
Sbjct: 4 KRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFK 63
Query: 66 APKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 125
PKV F T+IYHPNI+ G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL ++
Sbjct: 64 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 123
Query: 126 AELWKVNESEAIRNAKEWTRRYAM 149
A ++K + + A+EWT++YAM
Sbjct: 124 ARIYKTDRERYNQLAREWTQKYAM 147
>S56051-1|AAB25489.2| 147|Caenorhabditis elegans
ubiquitin-conjugating enzyme protein.
Length = 147
Score = 127 bits (307), Expect = 3e-30
Identities = 63/144 (43%), Positives = 85/144 (59%)
Query: 6 RRIIKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 65
+RI KE Q L ++P SA P + ++ + GP +S DYP
Sbjct: 4 KRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFK 63
Query: 66 APKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 125
PKV F T+IYHPNI+ G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL ++
Sbjct: 64 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 123
Query: 126 AELWKVNESEAIRNAKEWTRRYAM 149
A ++K + + A+EWT++YAM
Sbjct: 124 ARIYKTDRERYNQLAREWTQKYAM 147
>U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein.
Length = 192
Score = 109 bits (261), Expect = 1e-24
Identities = 46/130 (35%), Positives = 78/130 (60%)
Query: 6 RRIIKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 65
RR++++ ++L ++P G+S P+E N + I+ GP+++ +YP
Sbjct: 7 RRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNK 66
Query: 66 APKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 125
P V+FI+K++HPN+ G ICLDIL+++WSP + +L SIQ+LL PNP+ P +
Sbjct: 67 PPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLA 126
Query: 126 AELWKVNESE 135
A+L++ N E
Sbjct: 127 AQLYQENRRE 136
>AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein1 protein.
Length = 192
Score = 109 bits (261), Expect = 1e-24
Identities = 46/130 (35%), Positives = 78/130 (60%)
Query: 6 RRIIKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 65
RR++++ ++L ++P G+S P+E N + I+ GP+++ +YP
Sbjct: 7 RRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNK 66
Query: 66 APKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 125
P V+FI+K++HPN+ G ICLDIL+++WSP + +L SIQ+LL PNP+ P +
Sbjct: 67 PPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLA 126
Query: 126 AELWKVNESE 135
A+L++ N E
Sbjct: 127 AQLYQENRRE 136
>AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein20 protein.
Length = 199
Score = 91.5 bits (217), Expect = 2e-19
Identities = 46/111 (41%), Positives = 63/111 (56%), Gaps = 1/111 (0%)
Query: 39 VTGPEDSXXXXXXXXXXXXXXXDYPMSAPKVRFITKIYHPNID-RLGRICLDILKDKWSP 97
+ GP D+ YP S P V+F TKI+HPN+ + G ICLDILKD+W+
Sbjct: 43 IRGPPDTPYAGGMFDLDIKIPDQYPFSPPNVKFSTKIWHPNVSSQTGVICLDILKDQWAA 102
Query: 98 ALQIRTVLLSIQALLSAPNPDDPLANDVAELWKVNESEAIRNAKEWTRRYA 148
+L +RTVLLSIQAL+ P P DP VA+ + + A+ WT ++A
Sbjct: 103 SLTLRTVLLSIQALMCTPEPKDPQDAVVAKQYMEKPAVFKATAEYWTTKFA 153
>AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical
protein Y87G2A.9 protein.
Length = 170
Score = 85.4 bits (202), Expect = 2e-17
Identities = 47/155 (30%), Positives = 77/155 (49%), Gaps = 14/155 (9%)
Query: 6 RRIIKETQRLMQEPVPGISAVP-SETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPM 64
+R++ E + L P GI A P E N + ++TGPE++ DYP+
Sbjct: 7 KRLMTEYKELTTRPPEGIIAAPIDEDNFFEWECLITGPEETCFANGVFPARITFPQDYPL 66
Query: 65 SAPKVRFITKIYHPNIDRLGRICLDIL-------------KDKWSPALQIRTVLLSIQAL 111
S PK+RF I+HPNI GR+C+ IL ++WSP I +LLS+ ++
Sbjct: 67 SPPKMRFTCGIFHPNIYADGRVCISILHAPGDDPTGYELSNERWSPVQSIEKILLSVVSM 126
Query: 112 LSAPNPDDPLANDVAELWKVNESEAIRNAKEWTRR 146
L+ PN + P A++W+ + ++ + A R+
Sbjct: 127 LAEPNDESPANVSAAKMWREDRAQFEKIADSLVRK 161
>U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein18 protein.
Length = 153
Score = 85.0 bits (201), Expect = 2e-17
Identities = 48/145 (33%), Positives = 75/145 (51%), Gaps = 3/145 (2%)
Query: 6 RRIIKETQRLMQEPVPGISAVP-SETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPM 64
RR+ KE L V V ETN + V++ P+ DYP
Sbjct: 5 RRLQKELGDLKNCGVKAYENVECEETNLLKWTVLLI-PDKEPYNKGAFKVGITFPVDYPF 63
Query: 65 SAPKVRFITKIYHPNIDRLGRICLDIL-KDKWSPALQIRTVLLSIQALLSAPNPDDPLAN 123
PKV F TKIYHPN+D G+ CL I+ + W PA + V++++ +L++ P P P+
Sbjct: 64 KPPKVAFETKIYHPNVDEEGKFCLPIVTAENWKPATKTEQVMMALLSLINEPEPSHPIRA 123
Query: 124 DVAELWKVNESEAIRNAKEWTRRYA 148
DVAE ++ + + ++ A+E TR++A
Sbjct: 124 DVAEEFQKDHKKFMKTAEEHTRKHA 148
>Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical
protein F58A4.10 protein.
Length = 164
Score = 81.8 bits (193), Expect = 2e-16
Identities = 47/151 (31%), Positives = 76/151 (50%), Gaps = 14/151 (9%)
Query: 10 KETQRLMQEPVPGISAVPSETNARY-FHVIVTGPEDSXXXXXXXXXXXXXXXDYPMSAPK 68
K+ + + PV G SA + N Y + V+V GP D+ DYP PK
Sbjct: 10 KQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPK 69
Query: 69 VRFITKIYHPNIDRLGRICLDILKD-------------KWSPALQIRTVLLSIQALLSAP 115
++FI++I+HPNID+ G +C+ IL D +W P + T+LLS+ ++L+ P
Sbjct: 70 MKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDP 129
Query: 116 NPDDPLANDVAELWKVNESEAIRNAKEWTRR 146
N + P D A++ + N +E + + RR
Sbjct: 130 NFESPANVDAAKMQRENYAEFKKKVAQCVRR 160
>U39674-5|AAA80415.2| 229|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein21 protein.
Length = 229
Score = 79.8 bits (188), Expect = 8e-16
Identities = 39/82 (47%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
Query: 68 KVRFITKIYHPNID-RLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVA 126
+ +F+T+I+HPNI + G ICLDILKDKW+ +L +RTVLLS+QA+L +P P DP VA
Sbjct: 101 QAKFVTRIWHPNISSQTGTICLDILKDKWTASLTLRTVLLSLQAMLCSPEPSDPQDAVVA 160
Query: 127 ELWKVNESEAIRNAKEWTRRYA 148
+ + N A WT +A
Sbjct: 161 KQFINNYPMFTATAVYWTSYFA 182
>AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein3 protein.
Length = 243
Score = 71.3 bits (167), Expect = 3e-13
Identities = 38/138 (27%), Positives = 66/138 (47%), Gaps = 13/138 (9%)
Query: 6 RRIIKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 65
R + E + L +PV G + +E N + V + GP + +YP S
Sbjct: 13 RALTMELKNLQSQPVEGFTIDVNEDNLFVWTVGIYGPPKTLYQGGYFKASIRFPSNYPYS 72
Query: 66 APKVRFITKIYHPNIDRLGRICLDILK-------------DKWSPALQIRTVLLSIQALL 112
P ++F TK++HPN+ G +C+ IL ++W+P +RT+LLS+ +LL
Sbjct: 73 PPSMKFTTKVWHPNVYENGDLCISILHSPIDDPQSGELACERWNPTQSVRTILLSVISLL 132
Query: 113 SAPNPDDPLANDVAELWK 130
+ PN P D + +++
Sbjct: 133 NEPNTSSPANVDASVMYR 150
>AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein8 protein.
Length = 221
Score = 68.9 bits (161), Expect = 1e-12
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 2/119 (1%)
Query: 35 FHVIVTGPEDSXXXXXXXXXXXXXXXDYPMSAPKVRFITKIYHPNIDRL-GRICLDILKD 93
F V GP+D+ YP +P + F+ KI+HPNID G +CLD++
Sbjct: 35 FIVRFHGPKDTAYENGVWRIRVDMPDKYPFKSPSIGFLNKIFHPNIDEASGTVCLDVINQ 94
Query: 94 KWSPALQIRTVL-LSIQALLSAPNPDDPLANDVAELWKVNESEAIRNAKEWTRRYAMDN 151
W+ + + + LL+ PN DPL + A L+ E R +E+ R+A ++
Sbjct: 95 AWTALYDLTNIFDTFLPQLLTYPNAADPLNGEAARLYIHKPEEYRRTCREYVMRFASEH 153
>U70849-3|AAK67232.1| 166|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein9 protein.
Length = 166
Score = 67.7 bits (158), Expect = 3e-12
Identities = 29/92 (31%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Query: 61 DYPMSAPKVRFITKIYHPNIDRLGRICLDILKDK--WSPALQIRTVLLSIQALLSAPNPD 118
D+P + PK +F ++HPN+ G +CL +L + W P++ I+ +L+ IQ LL+ PN +
Sbjct: 67 DFPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDENKDWKPSISIKQLLIGIQDLLNHPNIE 126
Query: 119 DPLANDVAELWKVNESEAIRNAKEWTRRYAMD 150
DP + +++ N +E + K+ +YA +
Sbjct: 127 DPAQAEAYQIYCQNRAEYEKRVKKEAVKYAAE 158
>AF106565-1|AAC97374.1| 166|Caenorhabditis elegans
ubiquitin-conjugating enzyme 9homolog protein.
Length = 166
Score = 67.7 bits (158), Expect = 3e-12
Identities = 29/92 (31%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Query: 61 DYPMSAPKVRFITKIYHPNIDRLGRICLDILKDK--WSPALQIRTVLLSIQALLSAPNPD 118
D+P + PK +F ++HPN+ G +CL +L + W P++ I+ +L+ IQ LL+ PN +
Sbjct: 67 DFPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDENKDWKPSISIKQLLIGIQDLLNHPNIE 126
Query: 119 DPLANDVAELWKVNESEAIRNAKEWTRRYAMD 150
DP + +++ N +E + K+ +YA +
Sbjct: 127 DPAQAEAYQIYCQNRAEYEKRVKKEAVKYAAE 158
>U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein23 protein.
Length = 546
Score = 63.7 bits (148), Expect = 5e-11
Identities = 45/149 (30%), Positives = 72/149 (48%), Gaps = 5/149 (3%)
Query: 5 PRRIIKET-QRLMQEP-VPGISAVPSETNA-RYFHVIVTGPEDSXXXXXXXXXXXXXXXD 61
P ++I T Q L +EP V + V + + I+ G E++
Sbjct: 348 PMKVISVTPQNLPEEPNVSETNIVTVKFRLPKGIQGIIKGVEETPYEGGIFELDIKIGES 407
Query: 62 YPMSAPKVRFITKIYHPNIDRL-GRICL-DILKDKWSPALQIRTVLLSIQALLSAPNPDD 119
YP AP V+FITKI+HP++ G ICL D+ W ++ I VL+ IQ+ +S N +
Sbjct: 408 YPFKAPTVKFITKIWHPSVSPFDGTICLHDVDNGVWPVSMTIYKVLIVIQSWMSNFNEKE 467
Query: 120 PLANDVAELWKVNESEAIRNAKEWTRRYA 148
P+ ++ E N + A+ WT+R+A
Sbjct: 468 PIDVEILEQATNNREVFEKTAEFWTKRFA 496
>AL032653-6|CAA21716.1| 152|Caenorhabditis elegans Hypothetical
protein Y54E5B.4 protein.
Length = 152
Score = 63.7 bits (148), Expect = 5e-11
Identities = 37/116 (31%), Positives = 60/116 (51%), Gaps = 4/116 (3%)
Query: 3 ALPRRIIKETQRLMQEPVPGISAVPSETN--ARYFHVIVTGPEDSXXXXXXXXXXXXXXX 60
A RR++KE +L E G+ + T+ + + + V G E +
Sbjct: 4 AATRRLMKELAQLKSEAPEGLLVDNTSTSNDLKQWKIGVVGAEGTLYAGEVFMLQFTFGP 63
Query: 61 DYPMSAPKVRFITKIY--HPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSA 114
YP ++P+V F+ + HP+I G ICL IL D W+PAL +++V LSI ++LS+
Sbjct: 64 QYPFNSPEVMFVGETIPAHPHIYSNGHICLSILSDDWTPALSVQSVCLSILSMLSS 119
>AC024748-1|AAF60411.2| 218|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein15 protein.
Length = 218
Score = 55.2 bits (127), Expect = 2e-08
Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 8/124 (6%)
Query: 6 RRIIKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 65
RR+ K+ +LMQ+PV GI A+P+E N +H + G D+ ++P S
Sbjct: 22 RRLQKDYAKLMQDPVDGIKALPNEDNILEWHYCLRGSPDTPFYGGYYWGKVIFKENFPWS 81
Query: 66 APKVRFITKIYHPNIDRLGRICL---DILKDKWSPALQIRTVLLSIQALLSAPNPDDPLA 122
P + IT + R+CL D + W+P + +L+ + + + N + P A
Sbjct: 82 PPAITMITP--NGRFQTNTRLCLSISDYHPESWNPGWTVSAILIGLHSFM---NENSPAA 136
Query: 123 NDVA 126
+A
Sbjct: 137 GSIA 140
>Z66520-3|CAA91389.2| 160|Caenorhabditis elegans Hypothetical
protein F49E12.4 protein.
Length = 160
Score = 53.6 bits (123), Expect = 6e-08
Identities = 25/89 (28%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 61 DYPMSAPKVRFITKIYHPNIDRLG-RICLD-ILKDKWSPALQIRTVLLSIQALLSAPNPD 118
+YP P ++F +YHPN+D + +C +L++ W P + VLL++ LL+ P+
Sbjct: 71 EYPFKPPYLKFCHNVYHPNVDPVTCELCSPMLLQENWKPETTMEDVLLNLIVLLNEPDLS 130
Query: 119 DPLANDVAELWKVNESEAIRNAKEWTRRY 147
P+ D A + N+ E ++ + E +++
Sbjct: 131 RPVNIDAAHDYIHNKVEFVKKSTELAKKW 159
>AC024747-1|AAO21404.1| 203|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein26 protein.
Length = 203
Score = 52.4 bits (120), Expect = 1e-07
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 5/115 (4%)
Query: 6 RRIIKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 65
+R+ K+ QRL++EPVP + A P ETN + I+ G + D+P
Sbjct: 11 QRLKKDYQRLLKEPVPFMKAAPLETNILEWRYIIIGAPKTPYEGGIYMGKLLFPKDFPFK 70
Query: 66 APKVRFITKIYHPNIDRLGRICL---DILKDKWSPALQIRTVLLSIQALLSAPNP 117
P + +T + R+CL D D W+PA + T++ + + ++ P
Sbjct: 71 PPAILMLTP--NGRFQTNTRLCLSISDYHPDTWNPAWTVSTIITGLMSFMNDNQP 123
>Z81108-2|CAB03238.1| 180|Caenorhabditis elegans Hypothetical
protein R09B3.4 protein.
Length = 180
Score = 48.8 bits (111), Expect = 2e-06
Identities = 33/129 (25%), Positives = 55/129 (42%), Gaps = 8/129 (6%)
Query: 26 VPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMSAPKVRFITKIYHPNIDRLGR 85
VPS + + VT P++ +Y P V+ +TK++HPNI+ G
Sbjct: 52 VPSTSCLHELELTVT-PQEGIYRGGKFRFKITVPPEYNNVPPVVKCLTKVWHPNINEDGS 110
Query: 86 ICLDILKDK------WSPALQIRTVLLSIQALLS-APNPDDPLANDVAELWKVNESEAIR 138
ICL IL+ W P + V+ + +L + + +D L A++W N
Sbjct: 111 ICLSILRQNSLDQYGWRPTRNLTDVVHGLVSLFNDLMDFNDALNIQAAQMWSQNRESFNH 170
Query: 139 NAKEWTRRY 147
+E+ RY
Sbjct: 171 RVREYISRY 179
>U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein17 protein.
Length = 679
Score = 45.6 bits (103), Expect = 2e-05
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 12/88 (13%)
Query: 37 VIVTGPEDSXXXXXXXXXXXXXXXDYPMSAPKVRFITK-----IYHPNIDRLGRICLDIL 91
V+++GP+D+ YP S PK F+T ++PN+ G+ICL IL
Sbjct: 447 VLISGPDDTPYANGLFEFDIFFPTGYPFSPPKCAFLTTGSGNVRFNPNLYNDGKICLSIL 506
Query: 92 -------KDKWSPALQIRTVLLSIQALL 112
++KW+P + VL+SIQ ++
Sbjct: 507 GTWEGRPEEKWNPYCSLMQVLVSIQEVI 534
>U23517-9|AAB93334.2| 314|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein6 protein.
Length = 314
Score = 41.1 bits (92), Expect = 3e-04
Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 6/110 (5%)
Query: 6 RRIIKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 65
RR++KE L Q P A P E N +H + G + DYPM
Sbjct: 13 RRLMKEAMELRQ-PTEMYHAQPMEDNLFEWHFTIRGTLGTDFEGGIYHGRIIFPADYPMK 71
Query: 66 APKVRFITKIYHPNIDRLGRICLDIL---KDKWSPALQIRTVLLSIQALL 112
P + +T +++ ++CL I + W P+ IRT LL++ L
Sbjct: 72 PPNLILLTPNGRFELNK--KVCLSISGYHPETWLPSWSIRTALLALIGFL 119
>U13644-3|AAB52677.1| 230|Caenorhabditis elegans Ubiquitin e2
(conjugating enzyme)variant protein 2 protein.
Length = 230
Score = 41.1 bits (92), Expect = 3e-04
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 62 YPMSAPKVRFITKIYHPNIDRLGRICLDIL-KDKWSPALQIRTVLLSIQALLSAPNPDDP 120
+P+ P F T ++HPN+D G I L +L ++ WS ++ +L I LL+ P+
Sbjct: 97 WPIIPPICEFKTPLHHPNVDLRGSIYLKMLEQEHWSSETSLKKLLREISNLLATPDLTQ- 155
Query: 121 LANDVAELWKVNESEAIRNAKEWTRRYA 148
AN E W E++ N + R YA
Sbjct: 156 AAN--IEAWMEYENQR-ENYEAKARAYA 180
>Z81516-5|CAB04202.1| 219|Caenorhabditis elegans Hypothetical
protein F26H9.7 protein.
Length = 219
Score = 31.5 bits (68), Expect = 0.27
Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
Query: 9 IKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMSA-P 67
+ ++ L + V G ET FHVI+ GP S S P
Sbjct: 38 MNRSRHLQGKKVNGCIMRIDETKQLLFHVIIDGPVGSIYEGGTFFADINIQPYQNHSLIP 97
Query: 68 KVRFITKIYHPNIDRLG 84
+V F T I+HPN+ + G
Sbjct: 98 RVCFHTFIFHPNLGKYG 114
>Z92834-2|CAB07383.1| 139|Caenorhabditis elegans Hypothetical
protein F39B2.2 protein.
Length = 139
Score = 29.1 bits (62), Expect = 1.4
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 61 DYPMSAPKVRFITKIYHPNIDRLGRIC----LDILKDKWSPALQIRTVLLSIQ 109
+YP P VRF TK++ +++ + L L++ WS + I+TVL I+
Sbjct: 67 NYPREPPTVRFTTKVHMVGVNQSNGVIDKRNLTTLRN-WSNSYMIKTVLEDIR 118
>Z54342-15|CAK55172.1| 465|Caenorhabditis elegans Hypothetical
protein C08H9.4b protein.
Length = 465
Score = 28.3 bits (60), Expect = 2.5
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 118 DDPLANDVAELWKVNESEAIRNAKEW 143
D PL +D +WKVNES + A W
Sbjct: 346 DLPLRDDSDNIWKVNESGRLAVALRW 371
>AL032655-1|CAA21726.1| 995|Caenorhabditis elegans Hypothetical
protein Y6B3B.3 protein.
Length = 995
Score = 27.9 bits (59), Expect = 3.3
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 110 ALLSAPNPDDPLAN-DVAELWKVNESEAIRNAKEWT 144
AL+ NP N DVAE+ + N S I N EWT
Sbjct: 286 ALVELKNPTVNAENEDVAEVKERNRSIVIHNVPEWT 321
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.319 0.134 0.404
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,350,920
Number of Sequences: 27539
Number of extensions: 108649
Number of successful extensions: 247
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 208
Number of HSP's gapped (non-prelim): 27
length of query: 151
length of database: 12,573,161
effective HSP length: 75
effective length of query: 76
effective length of database: 10,507,736
effective search space: 798587936
effective search space used: 798587936
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)
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