GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002558-TA|BGIBMGA002558-PA|IPR002048|Calcium-binding
EF-hand
         (177 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.       24   0.81 
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    24   0.81 
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    24   0.81 
AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    21   7.6  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   7.6  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   7.6  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   7.6  

>X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.
          Length = 133

 Score = 23.8 bits (49), Expect = 0.81
 Identities = 13/44 (29%), Positives = 22/44 (50%)

Query: 94  RDIKAWYAFRIYDLDDDMYIGREDLLEATRLLTKGELHAQEREE 137
           R IK W+  R   L  ++   +E   +A R   + E H Q+++E
Sbjct: 48  RQIKIWFQNRRMKLKKELRAVKEINEQARREREEQERHKQQQQE 91


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 23.8 bits (49), Expect = 0.81
 Identities = 13/44 (29%), Positives = 22/44 (50%)

Query: 94  RDIKAWYAFRIYDLDDDMYIGREDLLEATRLLTKGELHAQEREE 137
           R IK W+  R   L  ++   +E   +A R   + E H Q+++E
Sbjct: 199 RQIKIWFQNRRMKLKKELRAVKEINEQARREREEQERHKQQQQE 242


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 23.8 bits (49), Expect = 0.81
 Identities = 13/44 (29%), Positives = 22/44 (50%)

Query: 94  RDIKAWYAFRIYDLDDDMYIGREDLLEATRLLTKGELHAQEREE 137
           R IK W+  R   L  ++   +E   +A R   + E H Q+++E
Sbjct: 258 RQIKIWFQNRRMKLKKELRAVKEINEQARREREEQERHKQQQQE 301


>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)

Query: 131 HAQEREEIVASVLDEA 146
           H  E  E +AS++DEA
Sbjct: 57  HVNEYVESLASIIDEA 72


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)

Query: 131 HAQEREEIVASVLDEA 146
           H  E  E +AS++DEA
Sbjct: 371 HVNEYVESLASIIDEA 386


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)

Query: 131 HAQEREEIVASVLDEA 146
           H  E  E +AS++DEA
Sbjct: 604 HVNEYVESLASIIDEA 619


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)

Query: 131 HAQEREEIVASVLDEA 146
           H  E  E +AS++DEA
Sbjct: 604 HVNEYVESLASIIDEA 619


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.322    0.138    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,087
Number of Sequences: 317
Number of extensions: 1727
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 177
length of database: 114,650
effective HSP length: 53
effective length of query: 124
effective length of database: 97,849
effective search space: 12133276
effective search space used: 12133276
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 41 (20.6 bits)