GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002557-TA|BGIBMGA002557-PA|undefined
         (177 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0017 + 17180991-17181074,17181657-17181759,17181794-17182014     29   2.8  
05_04_0321 + 20235221-20235628,20235874-20236839,20238313-20238405     28   4.9  
03_03_0247 - 15801705-15802478,15802558-15802728,15802886-15803047     27   6.5  

>05_04_0017 +
          17180991-17181074,17181657-17181759,17181794-17182014
          Length = 135

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 2/37 (5%)

Query: 37 CCVARIGR-RGGGRYVATAS-AYAYVRGRVIGSGDVS 71
          C  AR G   GGGR VA A+  +  V GRV+GS   S
Sbjct: 42 CTAARTGGGEGGGRGVAVAARGWLEVVGRVVGSDKAS 78


>05_04_0321 + 20235221-20235628,20235874-20236839,20238313-20238405
          Length = 488

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 11/22 (50%), Positives = 16/22 (72%)

Query: 46  GGGRYVATASAYAYVRGRVIGS 67
           GGGR++    AYAY++ +VI S
Sbjct: 406 GGGRHICIGEAYAYMQIKVIWS 427


>03_03_0247 - 15801705-15802478,15802558-15802728,15802886-15803047
          Length = 368

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 26  RAIKRDDRYFECCVARIGRRGGGRYVATASAYAYVRGRVIGSGDVS 71
           RA +R  R  +  V     RG     +TA++ A V G  +G GDVS
Sbjct: 258 RAARRRPRREDLAVTVAAARGRA---STAASLACVHGEAVGGGDVS 300


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.328    0.138    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,763,853
Number of Sequences: 37544
Number of extensions: 118123
Number of successful extensions: 380
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 379
Number of HSP's gapped (non-prelim): 3
length of query: 177
length of database: 14,793,348
effective HSP length: 77
effective length of query: 100
effective length of database: 11,902,460
effective search space: 1190246000
effective search space used: 1190246000
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 57 (27.1 bits)