GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002557-TA|BGIBMGA002557-PA|undefined
         (177 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.2  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   6.8  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   6.8  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 2/38 (5%)

Query: 6   ITWNR--RISESLGTKVRASRLRAIKRDDRYFECCVAR 41
           ITW +  R     G +    RL  I R+DR    C+ R
Sbjct: 365 ITWYKDGRQLPGTGRQSELLRLNGINREDRGMYQCIVR 402


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 2/38 (5%)

Query: 6   ITWNR--RISESLGTKVRASRLRAIKRDDRYFECCVAR 41
           ITW +  R     G +    RL  I R+DR    C+ R
Sbjct: 365 ITWYKDGRQLPGTGRQSELLRLNGINREDRGMYQCIVR 402


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 9/32 (28%), Positives = 15/32 (46%)

Query: 31  DDRYFECCVARIGRRGGGRYVATASAYAYVRG 62
           DDR F+  + R+ ++   R V   +     RG
Sbjct: 180 DDRMFDDIIQRLSKKANARAVVLFTRAEDARG 211


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 9/32 (28%), Positives = 15/32 (46%)

Query: 31  DDRYFECCVARIGRRGGGRYVATASAYAYVRG 62
           DDR F+  + R+ ++   R V   +     RG
Sbjct: 270 DDRMFDDIIQRLSKKANARAVVLFTRAEDARG 301


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.328    0.138    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,200
Number of Sequences: 429
Number of extensions: 1203
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 177
length of database: 140,377
effective HSP length: 54
effective length of query: 123
effective length of database: 117,211
effective search space: 14416953
effective search space used: 14416953
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 41 (20.6 bits)