GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002556-TA|BGIBMGA002556-PA|IPR006202|Neurotransmitter-
gated ion-channel ligand-binding, IPR006029|Neurotransmitter-gated
ion-channel transmembrane region, IPR006201|Neurotransmitter-gated
ion-channel, IPR002394|Nicotinic acetylcholine receptor
         (493 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB2B4.02 |grx5||monothiol glutaredoxin Grx5|Schizosaccharomyc...    31   0.37 
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc...    30   0.64 
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos...    27   5.9  
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar...    27   7.9  

>SPAPB2B4.02 |grx5||monothiol glutaredoxin Grx5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 146

 Score = 31.1 bits (67), Expect = 0.37
 Identities = 14/38 (36%), Positives = 20/38 (52%)

Query: 395 DTLRRWHRCPELHKAIDGINYIAEQTRKEEESTRVKED 432
           D L   H+  ELHK +  IN +A +  K+ E    K+D
Sbjct: 109 DILASMHKSGELHKILKEINALAPEQPKDSEEETTKKD 146


>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
           Mis17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 441

 Score = 30.3 bits (65), Expect = 0.64
 Identities = 21/82 (25%), Positives = 44/82 (53%), Gaps = 5/82 (6%)

Query: 30  DVILGSRPGLVAV-LTRALSHAGCA---GNPDA-KRLYDDLLSNYNKLVRPVLNVSDALT 84
           D+++G+   LV + LT+    AG +      DA ++ + + +     L   V+ V +A  
Sbjct: 247 DIVVGASDELVRIELTKLSKEAGGSKTLNELDAVQQFFQEFIKENEPLEPYVVKVKNAFV 306

Query: 85  VRIKLKLSQLIDVNLKNQIMTT 106
            ++ ++L +LID+   N+I++T
Sbjct: 307 EQVSIRLLELIDLLDANRILST 328


>SPBC409.12c |||nuclear telomere cap complex subunit
           Stn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 132 LHVPSDHIWRPDIVLYNNADGNFEVTL-ATKATLNYTGRVEWRPPAIYKSSCEIDVEYF 189
           LH+P  HI+  +  +  N DGN  + L  +  TL   GR+  +  ++Y      D+  F
Sbjct: 203 LHLPLVHIFNVENEIVENCDGNHILALNFSLQTLLQHGRIVRKSNSVYMLVTSKDIIRF 261


>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 598

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 14/46 (30%), Positives = 22/46 (47%)

Query: 421 RKEEESTRVKEDWKYVAMVLDRLFLWIFTLAVVVGSAGIILQAPTL 466
           +KE+E   +K  +  V+  LD L  W +       +  I+  APTL
Sbjct: 433 KKEKEHEEIKALFSEVSRTLDSLASWHYVPPPPESTVEIVSNAPTL 478


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.325    0.140    0.444 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,021,605
Number of Sequences: 5004
Number of extensions: 79015
Number of successful extensions: 221
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 219
Number of HSP's gapped (non-prelim): 4
length of query: 493
length of database: 2,362,478
effective HSP length: 76
effective length of query: 417
effective length of database: 1,982,174
effective search space: 826566558
effective search space used: 826566558
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 56 (26.6 bits)