Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002556-TA|BGIBMGA002556-PA|IPR006202|Neurotransmitter-
gated ion-channel ligand-binding, IPR006029|Neurotransmitter-gated
ion-channel transmembrane region, IPR006201|Neurotransmitter-gated
ion-channel, IPR002394|Nicotinic acetylcholine receptor
(493 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0236 + 21597601-21598415,21599223-21601152,21601361-21601510 32 1.2
05_01_0486 - 4047055-4049013 32 1.2
02_04_0612 + 24370446-24373044,24373135-24373541 32 1.2
11_06_0233 + 21565233-21566053,21566840-21567890,21568075-215687... 30 4.8
11_01_0019 + 135610-136296,136736-137275,137367-137518,137683-13... 30 4.8
12_02_0390 - 18510095-18510148,18510318-18512450,18513018-185136... 29 6.4
12_02_0388 - 18486957-18487016,18487286-18489418,18489985-184904... 29 6.4
09_02_0396 - 8540532-8540549,8540656-8542129,8542217-8543121 29 8.4
02_03_0407 - 18675368-18675378,18676047-18676977,18677323-186773... 29 8.4
01_02_0057 - 10691403-10691420,10691525-10692998,10693086-10693990 29 8.4
>11_06_0236 + 21597601-21598415,21599223-21601152,21601361-21601510
Length = 964
Score = 31.9 bits (69), Expect = 1.2
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 55 NPDAKRLYDDLLSNYNKLVRPVLNVSDALTVRIKLKLSQLIDVNLKNQIMTTNLWVEQTW 114
NPD K++ D+L NK LN S + +L + +D N + I+ ++W TW
Sbjct: 228 NPDIKKVLKDILIELNKHKYKELNASALSEKHLIDELREYLD-NKRYLIVIDDIWEASTW 286
>05_01_0486 - 4047055-4049013
Length = 652
Score = 31.9 bits (69), Expect = 1.2
Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 14/116 (12%)
Query: 126 YGGVEMLHVPSD--HIWRPDIVLYNNADGNFEVTLATKATLNYTGRVEWRPPAIYKSSCE 183
+GG ++P H + P+ V+ +A N ++ T+ +Y +PP K S E
Sbjct: 19 HGGANGFYLPGTFMHTYTPNEVI--SAKVNSLTSIETELPFSYYSLPYCKPPEGVKKSAE 76
Query: 184 ----------IDVEYFPFDQQTNEKFYTCCDEPYLDITFNITMRRKTLFYTVNLII 229
ID + F NE Y C +P + +R Y VN+I+
Sbjct: 77 NLGEILMGDQIDNSPYRFRVNVNESVYLCTTDPLTKEQAELLKKRARDLYQVNMIL 132
>02_04_0612 + 24370446-24373044,24373135-24373541
Length = 1001
Score = 31.9 bits (69), Expect = 1.2
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 214 ITMRRKTLFYTVNLIIPCMGISFLTVLVFYL 244
++ RRKT +Y + ++IP G L ++V++L
Sbjct: 616 VSQRRKTQYYLIRVLIPIFGFMSLILVVYFL 646
>11_06_0233 +
21565233-21566053,21566840-21567890,21568075-21568758,
21568927-21569019,21571815-21571835
Length = 889
Score = 29.9 bits (64), Expect = 4.8
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 55 NPDAKRLYDDLLSNYNKLVRPVLNVSDALTVRIKLKLSQLIDVNLKNQIMTTNLWVEQTW 114
NPD K++ D+L NK VL+VS + +L + + N + I+ ++W TW
Sbjct: 230 NPDIKKVLKDILIEVNKDRYMVLDVSTLSERHMIDELREYLG-NRRYLIVVDDIWETSTW 288
>11_01_0019 +
135610-136296,136736-137275,137367-137518,137683-137959
Length = 551
Score = 29.9 bits (64), Expect = 4.8
Identities = 20/90 (22%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
Query: 89 LKLSQLIDVNLKNQIMTTN--LWVEQTWYDYKLSWEPREYGGVEMLHVPSDHIWRPDI-- 144
L +SQ++ +++ + T+N + ++ T YDYK + + ++ +WR I
Sbjct: 385 LPISQVLSLDVHERTDTSNARIILKMTCYDYKRRYRHARLEDAYLQNLAQQRLWRQCIRC 444
Query: 145 -VLYNNADGNFEVTLATKATLNYTGRVEWR 173
+ A+G + +T YT EW+
Sbjct: 445 KHMIELAEGCYHMTCVCGYEFCYTCGKEWK 474
>12_02_0390 -
18510095-18510148,18510318-18512450,18513018-18513681,
18514089-18514202,18514835-18514979,18515274-18515331
Length = 1055
Score = 29.5 bits (63), Expect = 6.4
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 67 SNYNKLVRPVLNVSDALTVRIKLKLSQLIDVNLKNQIMTTNLWVEQTWYD 116
S N++ PV N +++ R+KL L D NLK+ + LW + D
Sbjct: 486 SRLNEIEGPVCN-EESVFARLKLSYEYLSDTNLKDCFTSCALWPDDYLLD 534
>12_02_0388 -
18486957-18487016,18487286-18489418,18489985-18490484,
18490728-18490899
Length = 954
Score = 29.5 bits (63), Expect = 6.4
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 67 SNYNKLVRPVLNVSDALTVRIKLKLSQLIDVNLKNQIMTTNLWVEQTWYD 116
S N++ PV N +++ R+KL L D NLK+ + LW + D
Sbjct: 383 SRLNEIEGPVCN-EESVFARLKLSYEYLSDTNLKDCFTSCALWPDDYLLD 431
>09_02_0396 - 8540532-8540549,8540656-8542129,8542217-8543121
Length = 798
Score = 29.1 bits (62), Expect = 8.4
Identities = 13/53 (24%), Positives = 27/53 (50%)
Query: 45 RALSHAGCAGNPDAKRLYDDLLSNYNKLVRPVLNVSDALTVRIKLKLSQLIDV 97
R H+ C + DA+ +D ++ + + + VS +R K++L+ +DV
Sbjct: 146 RLTVHSNCKTHNDARNKCEDFMNQRTSVSKKIEIVSKEEEIRYKIRLTSSLDV 198
>02_03_0407 -
18675368-18675378,18676047-18676977,18677323-18677376,
18677809-18678039,18678112-18678319,18678405-18678433,
18678638-18678706,18678832-18678893,18679056-18679133,
18679243-18679315,18681135-18681260
Length = 623
Score = 29.1 bits (62), Expect = 8.4
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 454 VGSAGIILQAPTLYDERAPIDVRLSEIAYATAKPRPPPP 492
V +G++ + L +RAP R S A TA P P PP
Sbjct: 516 VRPSGLVGYSGPLVSKRAPTPARASPKASRTASPLPRPP 554
>01_02_0057 - 10691403-10691420,10691525-10692998,10693086-10693990
Length = 798
Score = 29.1 bits (62), Expect = 8.4
Identities = 13/53 (24%), Positives = 27/53 (50%)
Query: 45 RALSHAGCAGNPDAKRLYDDLLSNYNKLVRPVLNVSDALTVRIKLKLSQLIDV 97
R H+ C + DA+ +D ++ + + + VS +R K++L+ +DV
Sbjct: 146 RLTVHSNCKTHNDARNKCEDFMNQRTSVSKKIEIVSKEEEIRYKIRLTSSLDV 198
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.325 0.140 0.444
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,350,408
Number of Sequences: 37544
Number of extensions: 512637
Number of successful extensions: 1771
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1766
Number of HSP's gapped (non-prelim): 11
length of query: 493
length of database: 14,793,348
effective HSP length: 85
effective length of query: 408
effective length of database: 11,602,108
effective search space: 4733660064
effective search space used: 4733660064
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 62 (29.1 bits)
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