GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002555-TA|BGIBMGA002555-PA|undefined
         (180 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni...    26   3.7  
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr...    25   4.9  
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac...    25   6.5  
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    25   8.6  

>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
           Rad15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 772

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 17/66 (25%), Positives = 30/66 (45%)

Query: 31  HRKIVYVPPAVFDNASIYIEKERVQNFSLNFLGGEAAYRIDGKVMRQLLTAATSSRSEES 90
           HRK++Y    + +      E +R+  +  + LG E  +   G   R+ L    S R E++
Sbjct: 66  HRKLIYCSRTMSEIDKALAELKRLMAYRTSQLGYEEPFLGLGLTSRKNLCLHPSVRREKN 125

Query: 91  RPALDA 96
              +DA
Sbjct: 126 GNVVDA 131


>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1250

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 11/37 (29%), Positives = 17/37 (45%)

Query: 128 WVYLKAEITKCNNNNQQIPVSNVISSAKLHKNREARG 164
           W+Y   ++T    N+QQ P ++       H   EA G
Sbjct: 375 WIYAVTQVTDALGNSQQFPSNDQFLLRFAHGYTEADG 411


>SPCC1393.02c |||non-specific DNA binding protein Spt2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 406

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 11/34 (32%), Positives = 22/34 (64%), Gaps = 2/34 (5%)

Query: 146 PVSNVISSAKL--HKNREARGPHAPKQAVRRATT 177
           P  N  SS+ L   K++ ++ PH+PK+ V+ +++
Sbjct: 130 PAVNETSSSGLLQSKDKRSQSPHSPKKPVKNSSS 163


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 119 DLVQTEQYSWVYLKAEITKCNNNNQQI 145
           D +++E Y W +L A +  C   + QI
Sbjct: 564 DALRSEAYQWPFLLATLRMCGWGDNQI 590


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.128    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 711,842
Number of Sequences: 5004
Number of extensions: 23891
Number of successful extensions: 52
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 49
Number of HSP's gapped (non-prelim): 4
length of query: 180
length of database: 2,362,478
effective HSP length: 69
effective length of query: 111
effective length of database: 2,017,202
effective search space: 223909422
effective search space used: 223909422
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)