GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002555-TA|BGIBMGA002555-PA|undefined
         (180 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U95020-1|AAB53333.1|  520|Homo sapiens voltage-dependent calcium...    31   2.3  
BX537728-1|CAD97821.1|  609|Homo sapiens hypothetical protein pr...    31   2.3  
BC075049-1|AAH75049.1|  520|Homo sapiens calcium channel, voltag...    31   2.3  
AF216867-1|AAF61674.1|   49|Homo sapiens voltage dependent calci...    31   2.3  
AC079790-1|AAY14711.1|   49|Homo sapiens unknown protein.              31   2.3  
AB095938-1|BAC23114.1| 1685|Homo sapiens KIAA2018 protein protein.     31   2.3  

>U95020-1|AAB53333.1|  520|Homo sapiens voltage-dependent calcium
           channel beta-4 subunit protein.
          Length = 520

 Score = 31.1 bits (67), Expect = 2.3
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 151 ISSAKLHKNREARGPHAPKQAVRRATTVR 179
           +SS+   KN  A GPH+P   V R TT R
Sbjct: 1   MSSSSYAKNGTADGPHSPTSQVARGTTTR 29


>BX537728-1|CAD97821.1|  609|Homo sapiens hypothetical protein
           protein.
          Length = 609

 Score = 31.1 bits (67), Expect = 2.3
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 39  PAVFDNASIYIEKERVQNFSLNFLGGEAAYRI-DGKVMRQLLTAATSSRSEESR 91
           P + D   +++    + NF++  L  E A  + DG  M  LLT A SS S+ S+
Sbjct: 534 PLLPDMPPMHMTNSHLSNFNMTSLFPEIATALPDGSAMSPLLTIANSSASDSSK 587


>BC075049-1|AAH75049.1|  520|Homo sapiens calcium channel,
           voltage-dependent, beta 4 subunit protein.
          Length = 520

 Score = 31.1 bits (67), Expect = 2.3
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 151 ISSAKLHKNREARGPHAPKQAVRRATTVR 179
           +SS+   KN  A GPH+P   V R TT R
Sbjct: 1   MSSSSYAKNGTADGPHSPTSQVARGTTTR 29


>AF216867-1|AAF61674.1|   49|Homo sapiens voltage dependent calcium
           channel beta 4 subunit protein.
          Length = 49

 Score = 31.1 bits (67), Expect = 2.3
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 151 ISSAKLHKNREARGPHAPKQAVRRATTVR 179
           +SS+   KN  A GPH+P   V R TT R
Sbjct: 1   MSSSSYAKNGTADGPHSPTSQVARGTTTR 29


>AC079790-1|AAY14711.1|   49|Homo sapiens unknown protein.
          Length = 49

 Score = 31.1 bits (67), Expect = 2.3
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 151 ISSAKLHKNREARGPHAPKQAVRRATTVR 179
           +SS+   KN  A GPH+P   V R TT R
Sbjct: 1   MSSSSYAKNGTADGPHSPTSQVARGTTTR 29


>AB095938-1|BAC23114.1| 1685|Homo sapiens KIAA2018 protein protein.
          Length = 1685

 Score = 31.1 bits (67), Expect = 2.3
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 39   PAVFDNASIYIEKERVQNFSLNFLGGEAAYRI-DGKVMRQLLTAATSSRSEESR 91
            P + D   +++    + NF++  L  E A  + DG  M  LLT A SS S+ S+
Sbjct: 1610 PLLPDMPPMHMTNSHLSNFNMTSLFPEIATALPDGSAMSPLLTIANSSASDSSK 1663


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.317    0.128    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,482,111
Number of Sequences: 224733
Number of extensions: 708095
Number of successful extensions: 954
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 950
Number of HSP's gapped (non-prelim): 6
length of query: 180
length of database: 73,234,838
effective HSP length: 85
effective length of query: 95
effective length of database: 54,132,533
effective search space: 5142590635
effective search space used: 5142590635
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)