GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002555-TA|BGIBMGA002555-PA|undefined
         (180 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23448-8|AAL27226.1|  849|Caenorhabditis elegans Dnaj domain (pr...    30   1.1  
U23448-7|AAM81128.1|  868|Caenorhabditis elegans Dnaj domain (pr...    30   1.1  
U23448-6|AAL27225.1|  915|Caenorhabditis elegans Dnaj domain (pr...    30   1.1  
U23448-5|AAL27227.1|  912|Caenorhabditis elegans Dnaj domain (pr...    30   1.1  
AF045641-1|AAK68386.1|  970|Caenorhabditis elegans Hypothetical ...    28   4.4  

>U23448-8|AAL27226.1|  849|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 5, isoform b
           protein.
          Length = 849

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 137 KCNNNNQQIPVSNVISSAKLHKNREARGPHAP 168
           K  N++Q  PVS V+S + +  N E R  H P
Sbjct: 218 KNKNSSQTSPVSTVVSESSISSNLETRPVHPP 249


>U23448-7|AAM81128.1|  868|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 5, isoform d
           protein.
          Length = 868

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 137 KCNNNNQQIPVSNVISSAKLHKNREARGPHAP 168
           K  N++Q  PVS V+S + +  N E R  H P
Sbjct: 218 KNKNSSQTSPVSTVVSESSISSNLETRPVHPP 249


>U23448-6|AAL27225.1|  915|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 5, isoform a
           protein.
          Length = 915

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 137 KCNNNNQQIPVSNVISSAKLHKNREARGPHAP 168
           K  N++Q  PVS V+S + +  N E R  H P
Sbjct: 218 KNKNSSQTSPVSTVVSESSISSNLETRPVHPP 249


>U23448-5|AAL27227.1|  912|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 5, isoform c
           protein.
          Length = 912

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 137 KCNNNNQQIPVSNVISSAKLHKNREARGPHAP 168
           K  N++Q  PVS V+S + +  N E R  H P
Sbjct: 217 KNKNSSQTSPVSTVVSESSISSNLETRPVHPP 248


>AF045641-1|AAK68386.1|  970|Caenorhabditis elegans Hypothetical
           protein F53H1.1 protein.
          Length = 970

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 15/31 (48%), Positives = 17/31 (54%)

Query: 37  VPPAVFDNASIYIEKERVQNFSLNFLGGEAA 67
           V PA    A +  EK    N  LN+LGGEAA
Sbjct: 829 VAPAQMSAAMLAKEKANRLNEKLNYLGGEAA 859


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.317    0.128    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,919,306
Number of Sequences: 27539
Number of extensions: 131340
Number of successful extensions: 289
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 284
Number of HSP's gapped (non-prelim): 5
length of query: 180
length of database: 12,573,161
effective HSP length: 77
effective length of query: 103
effective length of database: 10,452,658
effective search space: 1076623774
effective search space used: 1076623774
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)