GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002555-TA|BGIBMGA002555-PA|undefined
         (180 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.3  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   5.3  
DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               21   9.2  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    21   9.2  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    21   9.2  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 12/22 (54%), Positives = 12/22 (54%)

Query: 76  RQLLTAATSSRSEESRPALDAA 97
           R L  AATSS S   RPA   A
Sbjct: 828 RYLSAAATSSTSTSPRPASSTA 849


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 8/10 (80%), Positives = 8/10 (80%)

Query: 164 GPHAPKQAVR 173
           G HAPKQ VR
Sbjct: 281 GDHAPKQTVR 290


>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 11/38 (28%), Positives = 15/38 (39%)

Query: 100 DCQYECXXXXXXXXXXXXXDLVQTEQYSWVYLKAEITK 137
           DC+ E              D+ Q +Q    YLK  +TK
Sbjct: 28  DCRKESKVSWAALKKMKAGDMEQDDQNLKCYLKCFMTK 65


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding
          protein ASP1 protein.
          Length = 144

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 9/21 (42%), Positives = 11/21 (52%)

Query: 23 LCLEYSITHRKIVYVPPAVFD 43
          LCL     +    +VPP VFD
Sbjct: 16 LCLHAIFVNAAPDWVPPEVFD 36


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
          protein ASP1 protein.
          Length = 144

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 9/21 (42%), Positives = 11/21 (52%)

Query: 23 LCLEYSITHRKIVYVPPAVFD 43
          LCL     +    +VPP VFD
Sbjct: 16 LCLHAIFVNAAPDWVPPEVFD 36


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.128    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,644
Number of Sequences: 429
Number of extensions: 1632
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 180
length of database: 140,377
effective HSP length: 54
effective length of query: 126
effective length of database: 117,211
effective search space: 14768586
effective search space used: 14768586
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 41 (20.6 bits)