GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002554-TA|BGIBMGA002554-PA|undefined
         (86 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|...    25   1.1  
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ...    25   2.0  
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce...    23   6.0  
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz...    23   6.0  
SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces pomb...    23   8.0  
SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr 1...    23   8.0  
SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    23   8.0  
SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces ...    23   8.0  

>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 467

 Score = 25.4 bits (53), Expect = 1.1
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 44  HLTRQVAYWKRISELRSCGCSGHAD-HAERVSGDRSL 79
           +LT   + W    ELR CGC G    H +  + D S+
Sbjct: 351 YLTSDHSIWSWGVELRYCGCLGLGSLHLQEQTSDPSI 387


>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 24.6 bits (51), Expect = 2.0
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 14  PLFAPSTVVNQKGGAITETVGATRGLGASTHLTRQVAYWKRISELRSCGCSGHA-DHAER 72
           P +     + +KG  +  T    R +  + HL  Q   W+ + EL +  C G   D+ E+
Sbjct: 243 PEYVAKFSIGEKGLTVW-TSSMARTIQTARHLNCQKLEWRALDELDAGTCDGFTYDYIEQ 301


>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 674

 Score = 23.0 bits (47), Expect = 6.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 25 KGGAITETVGATRGLGASTHLTRQVAYW 52
          + G   ++ GA+  +GAS H +R  A W
Sbjct: 11 RSGLRFQSKGASFKIGASLHGSRMTARW 38


>SPBC1306.01c ||SPBC409.22c|translation elongation factor
          G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 770

 Score = 23.0 bits (47), Expect = 6.0
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 53 KRISELRSCGCSGHADHAERVSGDRSL 79
          KR+ ++R+ G S H D  +    +R L
Sbjct: 54 KRLKQIRNIGISAHIDSGKTTFTERVL 80


>SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 401

 Score = 22.6 bits (46), Expect = 8.0
 Identities = 12/33 (36%), Positives = 13/33 (39%)

Query: 2   NESNGYCARITFPLFAPSTVVNQKGGAITETVG 34
           N  NG C R  FP   P      K G +   VG
Sbjct: 177 NYCNGPCYRCMFPNPTPVVASCAKSGILGPVVG 209


>SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 22.6 bits (46), Expect = 8.0
 Identities = 9/40 (22%), Positives = 17/40 (42%)

Query: 13  FPLFAPSTVVNQKGGAITETVGATRGLGASTHLTRQVAYW 52
           F +FA   ++ + G  + +T     GL     ++    YW
Sbjct: 275 FSVFATIIIIERFGPPLMKTTSVVLGLVVGMIISAATGYW 314


>SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 536

 Score = 22.6 bits (46), Expect = 8.0
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 38  GLGASTHLTRQVAYWKRISELRSCGCSGHADHAERV-SGDRSLRVLLCSK 86
           GL  S H  R   Y ++I++LRS   +     A+ V  G    +V++C++
Sbjct: 99  GLPFSKHQVRVNRYQQKINDLRSAYINLCVPIAQHVLMGLAKAKVIVCNE 148


>SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 22.6 bits (46), Expect = 8.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 15  LFAPSTVVNQKGGAITETVGATR 37
           LF   TVV++  G I+ T+G +R
Sbjct: 103 LFKRQTVVDELLGDISNTIGCSR 125


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.131    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 342,661
Number of Sequences: 5004
Number of extensions: 9188
Number of successful extensions: 19
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 8
length of query: 86
length of database: 2,362,478
effective HSP length: 61
effective length of query: 25
effective length of database: 2,057,234
effective search space: 51430850
effective search space used: 51430850
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)