GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002554-TA|BGIBMGA002554-PA|undefined
         (86 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1332 - 29403320-29407804                                         30   0.20 
02_05_0999 + 33405982-33408279,33408356-33408466,33408551-334087...    30   0.26 
07_03_1091 + 23899825-23900649,23900750-23900998,23901104-239011...    27   1.4  
12_02_0990 + 25073910-25074734                                         26   4.3  
02_01_0521 + 3768072-3768239,3768280-3768337,3769197-3769659,376...    25   5.7  
12_01_0423 + 3337401-3337419,3337777-3338235,3338650-3338735,333...    25   7.5  
04_03_0601 - 17875540-17875776,17876611-17876736,17877700-178777...    25   10.0 

>06_03_1332 - 29403320-29407804
          Length = 1494

 Score = 30.3 bits (65), Expect = 0.20
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 4/56 (7%)

Query: 34  GATRGLGASTHLTRQVAYWKRISELRSCG----CSGHADHAERVSGDRSLRVLLCS 85
           G   GL  + H T +    + +S   SCG     S HA+  E V+G   +R+L CS
Sbjct: 108 GCLLGLVLNAHHTARNIKRRYLSASCSCGGDEEASRHANEEEAVAGSGCMRILACS 163


>02_05_0999 +
           33405982-33408279,33408356-33408466,33408551-33408703,
           33408870-33409033,33409113-33409210,33409296-33409474,
           33409588-33409675,33410285-33410451
          Length = 1085

 Score = 29.9 bits (64), Expect = 0.26
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 2   NESNGYCARITFPLFAPSTVVNQKGGAITETVGATRGLGASTHLTRQV 49
           N SN    +   PLFAP +V NQ G  + E +   R  G S  L+ QV
Sbjct: 573 NRSNPNSGQYVQPLFAPESVQNQPGAPLME-IHPERACGGSV-LSSQV 618


>07_03_1091 +
           23899825-23900649,23900750-23900998,23901104-23901195,
           23901413-23902193
          Length = 648

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 17  APSTVVNQKGGA--ITETVGATRGLGASTHLTRQVAYWKRISE-LRSCGCSGHADHAERV 73
           AP+   + +GG   + +    T  L  +   +    ++ R+S+  RSC  S HADH + +
Sbjct: 44  APTAPRSSRGGGRVLLQVTNITPALSGANPFSGHHGFYLRLSDSARSCYVSLHADHDDLI 103


>12_02_0990 + 25073910-25074734
          Length = 274

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 33  VGATRGLGASTHLTRQVAYWKRISELRSC 61
           V   RG   S+H +R  +YW R  +++ C
Sbjct: 213 VPVIRGAAKSSHASRGGSYWGRKGKVKRC 241


>02_01_0521 +
           3768072-3768239,3768280-3768337,3769197-3769659,
           3769736-3769990,3770763-3770934,3772260-3772910,
           3773659-3774045,3774123-3774155,3774239-3774307,
           3774388-3774463,3775135-3775223,3775442-3775615,
           3775693-3775821
          Length = 907

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 11/36 (30%), Positives = 15/36 (41%)

Query: 6   GYCARITFPLFAPSTVVNQKGGAITETVGATRGLGA 41
           GY A +  P    S     K G +    G TRG+ +
Sbjct: 811 GYVASVELPEVGQSVSQGNKFGVVVSVKGTTRGINS 846


>12_01_0423 +
           3337401-3337419,3337777-3338235,3338650-3338735,
           3338974-3339022,3339225-3339533,3339555-3339710,
           3339871-3340086,3340404-3340906,3341050-3341116,
           3341215-3341272,3341561-3341699,3341840-3341956,
           3342069-3342246,3342459-3343093
          Length = 996

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 14/67 (20%), Positives = 30/67 (44%)

Query: 2   NESNGYCARITFPLFAPSTVVNQKGGAITETVGATRGLGASTHLTRQVAYWKRISELRSC 61
           ++++ + ++ T P F  ++  NQ GG   +    T    ++T  T+  A    IS + + 
Sbjct: 354 SQTSTFGSQTTAPAFGQTSFGNQAGGTRIQPYTQTPDADSATSGTQPAAKLNSISAMEAY 413

Query: 62  GCSGHAD 68
               H +
Sbjct: 414 KAKSHEE 420


>04_03_0601 -
           17875540-17875776,17876611-17876736,17877700-17877727,
           17878131-17878936
          Length = 398

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 16/52 (30%), Positives = 19/52 (36%)

Query: 1   MNESNGYCARITFPLFAPSTVVNQKGGAITETVGATRGLGASTHLTRQVAYW 52
           M ES GY +   F            GGA    +G     GAS HL   +  W
Sbjct: 306 MCESTGYFSEFAFHQHQHMLRSVVGGGAARVMLGVALKGGASAHLIHPLLLW 357


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.131    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,533,100
Number of Sequences: 37544
Number of extensions: 79542
Number of successful extensions: 175
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 170
Number of HSP's gapped (non-prelim): 7
length of query: 86
length of database: 14,793,348
effective HSP length: 65
effective length of query: 21
effective length of database: 12,352,988
effective search space: 259412748
effective search space used: 259412748
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)