GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002554-TA|BGIBMGA002554-PA|undefined
         (86 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D43951-1|BAA07895.3| 1175|Homo sapiens KIAA0099 protein protein.       27   9.3  
BC013398-1|AAH13398.1| 1186|Homo sapiens pumilio homolog 1 (Dros...    27   9.3  
AL445235-5|CAI22249.1| 1224|Homo sapiens pumilio homolog 1 (Dros...    27   9.3  
AL445235-4|CAI22248.1|  925|Homo sapiens pumilio homolog 1 (Dros...    27   9.3  
AL445235-3|CAI22247.1| 1189|Homo sapiens pumilio homolog 1 (Dros...    27   9.3  
AL445235-2|CAI22246.1| 1186|Homo sapiens pumilio homolog 1 (Dros...    27   9.3  
AL356320-6|CAH71205.1| 1224|Homo sapiens pumilio homolog 1 (Dros...    27   9.3  
AL356320-5|CAH71204.1|  925|Homo sapiens pumilio homolog 1 (Dros...    27   9.3  
AL356320-4|CAH71203.1| 1186|Homo sapiens pumilio homolog 1 (Dros...    27   9.3  
AL356320-3|CAH71202.1| 1189|Homo sapiens pumilio homolog 1 (Dros...    27   9.3  
AK222605-1|BAD96325.1| 1188|Homo sapiens pumilio homolog 1 varia...    27   9.3  
AF315592-1|AAG31807.1| 1186|Homo sapiens Pumilio 1 protein.            27   9.3  

>D43951-1|BAA07895.3| 1175|Homo sapiens KIAA0099 protein protein.
          Length = 1175

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 13  FPLFAPSTVVNQKGGAITETVGATRGLGASTHL 45
           +P+ AP+   +Q G A+    GA  GLGA   L
Sbjct: 564 YPVLAPAAYYDQTG-ALVVNAGARNGLGAPVRL 595


>BC013398-1|AAH13398.1| 1186|Homo sapiens pumilio homolog 1
           (Drosophila) protein.
          Length = 1186

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 13  FPLFAPSTVVNQKGGAITETVGATRGLGASTHL 45
           +P+ AP+   +Q G A+    GA  GLGA   L
Sbjct: 550 YPVLAPAAYYDQTG-ALVVNAGARNGLGAPVRL 581


>AL445235-5|CAI22249.1| 1224|Homo sapiens pumilio homolog 1
           (Drosophila) protein.
          Length = 1224

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 13  FPLFAPSTVVNQKGGAITETVGATRGLGASTHL 45
           +P+ AP+   +Q G A+    GA  GLGA   L
Sbjct: 586 YPVLAPAAYYDQTG-ALVVNAGARNGLGAPVRL 617


>AL445235-4|CAI22248.1|  925|Homo sapiens pumilio homolog 1
           (Drosophila) protein.
          Length = 925

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 13  FPLFAPSTVVNQKGGAITETVGATRGLGASTHL 45
           +P+ AP+   +Q G A+    GA  GLGA   L
Sbjct: 287 YPVLAPAAYYDQTG-ALVVNAGARNGLGAPVRL 318


>AL445235-3|CAI22247.1| 1189|Homo sapiens pumilio homolog 1
           (Drosophila) protein.
          Length = 1189

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 13  FPLFAPSTVVNQKGGAITETVGATRGLGASTHL 45
           +P+ AP+   +Q G A+    GA  GLGA   L
Sbjct: 551 YPVLAPAAYYDQTG-ALVVNAGARNGLGAPVRL 582


>AL445235-2|CAI22246.1| 1186|Homo sapiens pumilio homolog 1
           (Drosophila) protein.
          Length = 1186

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 13  FPLFAPSTVVNQKGGAITETVGATRGLGASTHL 45
           +P+ AP+   +Q G A+    GA  GLGA   L
Sbjct: 550 YPVLAPAAYYDQTG-ALVVNAGARNGLGAPVRL 581


>AL356320-6|CAH71205.1| 1224|Homo sapiens pumilio homolog 1
           (Drosophila) protein.
          Length = 1224

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 13  FPLFAPSTVVNQKGGAITETVGATRGLGASTHL 45
           +P+ AP+   +Q G A+    GA  GLGA   L
Sbjct: 586 YPVLAPAAYYDQTG-ALVVNAGARNGLGAPVRL 617


>AL356320-5|CAH71204.1|  925|Homo sapiens pumilio homolog 1
           (Drosophila) protein.
          Length = 925

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 13  FPLFAPSTVVNQKGGAITETVGATRGLGASTHL 45
           +P+ AP+   +Q G A+    GA  GLGA   L
Sbjct: 287 YPVLAPAAYYDQTG-ALVVNAGARNGLGAPVRL 318


>AL356320-4|CAH71203.1| 1186|Homo sapiens pumilio homolog 1
           (Drosophila) protein.
          Length = 1186

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 13  FPLFAPSTVVNQKGGAITETVGATRGLGASTHL 45
           +P+ AP+   +Q G A+    GA  GLGA   L
Sbjct: 550 YPVLAPAAYYDQTG-ALVVNAGARNGLGAPVRL 581


>AL356320-3|CAH71202.1| 1189|Homo sapiens pumilio homolog 1
           (Drosophila) protein.
          Length = 1189

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 13  FPLFAPSTVVNQKGGAITETVGATRGLGASTHL 45
           +P+ AP+   +Q G A+    GA  GLGA   L
Sbjct: 551 YPVLAPAAYYDQTG-ALVVNAGARNGLGAPVRL 582


>AK222605-1|BAD96325.1| 1188|Homo sapiens pumilio homolog 1 variant
           protein.
          Length = 1188

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 13  FPLFAPSTVVNQKGGAITETVGATRGLGASTHL 45
           +P+ AP+   +Q G A+    GA  GLGA   L
Sbjct: 550 YPVLAPAAYYDQTG-ALVVNAGARNGLGAPVRL 581


>AF315592-1|AAG31807.1| 1186|Homo sapiens Pumilio 1 protein.
          Length = 1186

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 13  FPLFAPSTVVNQKGGAITETVGATRGLGASTHL 45
           +P+ AP+   +Q G A+    GA  GLGA   L
Sbjct: 550 YPVLAPAAYYDQTG-ALVVNAGARNGLGAPVRL 581


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.319    0.131    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,938,503
Number of Sequences: 224733
Number of extensions: 346372
Number of successful extensions: 540
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 540
Number of HSP's gapped (non-prelim): 12
length of query: 86
length of database: 73,234,838
effective HSP length: 64
effective length of query: 22
effective length of database: 58,851,926
effective search space: 1294742372
effective search space used: 1294742372
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)