GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002554-TA|BGIBMGA002554-PA|undefined
         (86 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32683-15|CAA83631.1| 1061|Caenorhabditis elegans Hypothetical p...    25   6.6  
Z32680-6|CAA83602.1| 1061|Caenorhabditis elegans Hypothetical pr...    25   6.6  
AY819766-1|AAV69856.1| 4250|Caenorhabditis elegans kettin protein.     25   6.6  
AF106579-4|AAK82895.1| 4203|Caenorhabditis elegans Kettin (droso...    25   6.6  
AF106579-3|AAM45364.1| 4369|Caenorhabditis elegans Kettin (droso...    25   6.6  
AF106579-2|AAM45363.1| 4447|Caenorhabditis elegans Kettin (droso...    25   6.6  
AF106579-1|AAC78200.4| 4889|Caenorhabditis elegans Kettin (droso...    25   6.6  
AB026846-1|BAA90302.2| 4219|Caenorhabditis elegans kettin protein.     25   6.6  

>Z32683-15|CAA83631.1| 1061|Caenorhabditis elegans Hypothetical
           protein C28A5.6 protein.
          Length = 1061

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 8/14 (57%), Positives = 10/14 (71%)

Query: 52  WKRISELRSCGCSG 65
           WKR+  +R C CSG
Sbjct: 125 WKRLKIMRQCCCSG 138


>Z32680-6|CAA83602.1| 1061|Caenorhabditis elegans Hypothetical
           protein C28A5.6 protein.
          Length = 1061

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 8/14 (57%), Positives = 10/14 (71%)

Query: 52  WKRISELRSCGCSG 65
           WKR+  +R C CSG
Sbjct: 125 WKRLKIMRQCCCSG 138


>AY819766-1|AAV69856.1| 4250|Caenorhabditis elegans kettin protein.
          Length = 4250

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 13/41 (31%), Positives = 18/41 (43%)

Query: 20   TVVNQKGGAITETVGATRGLGASTHLTRQVAYWKRISELRS 60
            T+ N +G A++       G G     TR    WKRI  L +
Sbjct: 2356 TITNSEGEAVSTASIRVAGTGPILGNTRHEESWKRIQILEA 2396


>AF106579-4|AAK82895.1| 4203|Caenorhabditis elegans Kettin (drosophila
            actin-binding)homolog protein 1, isoform b protein.
          Length = 4203

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 13/41 (31%), Positives = 18/41 (43%)

Query: 20   TVVNQKGGAITETVGATRGLGASTHLTRQVAYWKRISELRS 60
            T+ N +G A++       G G     TR    WKRI  L +
Sbjct: 2273 TITNSEGEAVSTASIRVAGTGPILGNTRHEESWKRIQILEA 2313


>AF106579-3|AAM45364.1| 4369|Caenorhabditis elegans Kettin (drosophila
            actin-binding)homolog protein 1, isoform d protein.
          Length = 4369

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 13/41 (31%), Positives = 18/41 (43%)

Query: 20   TVVNQKGGAITETVGATRGLGASTHLTRQVAYWKRISELRS 60
            T+ N +G A++       G G     TR    WKRI  L +
Sbjct: 2594 TITNSEGEAVSTASIRVAGTGPILGNTRHEESWKRIQILEA 2634


>AF106579-2|AAM45363.1| 4447|Caenorhabditis elegans Kettin (drosophila
            actin-binding)homolog protein 1, isoform c protein.
          Length = 4447

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 13/41 (31%), Positives = 18/41 (43%)

Query: 20   TVVNQKGGAITETVGATRGLGASTHLTRQVAYWKRISELRS 60
            T+ N +G A++       G G     TR    WKRI  L +
Sbjct: 2594 TITNSEGEAVSTASIRVAGTGPILGNTRHEESWKRIQILEA 2634


>AF106579-1|AAC78200.4| 4889|Caenorhabditis elegans Kettin (drosophila
            actin-binding)homolog protein 1, isoform a protein.
          Length = 4889

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 13/41 (31%), Positives = 18/41 (43%)

Query: 20   TVVNQKGGAITETVGATRGLGASTHLTRQVAYWKRISELRS 60
            T+ N +G A++       G G     TR    WKRI  L +
Sbjct: 2995 TITNSEGEAVSTASIRVAGTGPILGNTRHEESWKRIQILEA 3035


>AB026846-1|BAA90302.2| 4219|Caenorhabditis elegans kettin protein.
          Length = 4219

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 13/41 (31%), Positives = 18/41 (43%)

Query: 20   TVVNQKGGAITETVGATRGLGASTHLTRQVAYWKRISELRS 60
            T+ N +G A++       G G     TR    WKRI  L +
Sbjct: 2289 TITNSEGEAVSTASIRVAGTGPILGNTRHEESWKRIQILEA 2329


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.319    0.131    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,946,211
Number of Sequences: 27539
Number of extensions: 55932
Number of successful extensions: 119
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 111
Number of HSP's gapped (non-prelim): 8
length of query: 86
length of database: 12,573,161
effective HSP length: 65
effective length of query: 21
effective length of database: 10,783,126
effective search space: 226445646
effective search space used: 226445646
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)