GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002553-TA|BGIBMGA002553-PA|undefined
         (52 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     23   0.18 
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   0.71 
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    20   1.6  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    20   1.6  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    18   6.6  
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    18   6.6  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       18   8.7  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    18   8.7  

>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 23.4 bits (48), Expect = 0.18
 Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 1   MKHAAQRRTTPH-NAAQRRTTPHSTAAPNVLAAVQAPDSNPLFHFRVPGSGS 51
           + H +   TT H +   ++ +P+    P V      P     +HF V  SG+
Sbjct: 123 VNHLSSDSTTIHWHGHHQKNSPYMDGVPFVTQCPIHPGMTFRYHFNVHNSGT 174


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.4 bits (43), Expect = 0.71
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)

Query: 13 NAAQRRTTPHSTAAPNVLAAVQAPDS 38
          N+ Q R  P+  AAP+   AVQ P +
Sbjct: 26 NSQQPRNVPNF-AAPSTSTAVQRPQA 50



 Score = 18.6 bits (36), Expect = 5.0
 Identities = 8/18 (44%), Positives = 10/18 (55%)

Query: 23  STAAPNVLAAVQAPDSNP 40
           +T A   LAA + P  NP
Sbjct: 289 TTDAAEFLAAQEIPGQNP 306


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 20.2 bits (40), Expect = 1.6
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 16  QRRTTPHSTAAPNVLAAVQAPDSNPLFHFRVPGSGS 51
           Q++   +  AA N+L     P  +PLFH   P + S
Sbjct: 94  QQQAGANMAAAANLLRP--HPYLSPLFHSAAPRTAS 127


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 20.2 bits (40), Expect = 1.6
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 10  TPHNAAQRRTTPHSTAAPNVLAAVQAPDS 38
           TP +     +T  S ++P+V AA    DS
Sbjct: 157 TPVSINNNTSTSSSASSPSVTAAPHLRDS 185


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 18.2 bits (35), Expect = 6.6
 Identities = 6/14 (42%), Positives = 10/14 (71%)

Query: 38  SNPLFHFRVPGSGS 51
           + P+F  +VP +GS
Sbjct: 438 AEPVFDGKVPSNGS 451


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory receptor
           candidate 25 protein.
          Length = 314

 Score = 18.2 bits (35), Expect = 6.6
 Identities = 6/14 (42%), Positives = 10/14 (71%)

Query: 38  SNPLFHFRVPGSGS 51
           + P+F  +VP +GS
Sbjct: 263 AEPVFDGKVPSNGS 276


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 17.8 bits (34), Expect = 8.7
 Identities = 5/11 (45%), Positives = 10/11 (90%)

Query: 30  LAAVQAPDSNP 40
           L++++ P+SNP
Sbjct: 286 LSSIRHPESNP 296


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 17.8 bits (34), Expect = 8.7
 Identities = 8/21 (38%), Positives = 11/21 (52%)

Query: 8   RTTPHNAAQRRTTPHSTAAPN 28
           R T H   +R  T H+T + N
Sbjct: 268 RFTRHLIQRRTHTRHTTTSHN 288


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.315    0.122    0.366 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,187
Number of Sequences: 317
Number of extensions: 369
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 52
length of database: 114,650
effective HSP length: 33
effective length of query: 19
effective length of database: 104,189
effective search space:  1979591
effective search space used:  1979591
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.5 bits)
S2: 34 (17.8 bits)