GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002553-TA|BGIBMGA002553-PA|undefined
         (52 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.12c |shf1||small histone ubiquitination factor Shf1|Sch...    25   0.92 
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    25   1.6  
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    23   4.9  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    22   8.5  
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    22   8.5  

>SPAC22F8.12c |shf1||small histone ubiquitination factor
          Shf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 165

 Score = 25.4 bits (53), Expect = 0.92
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 16 QRRTTPHSTAAPNVLAAVQAPDSNPLFHFRVPGSGST 52
          QR  TP S+   +  ++  + + N  +H+RVP + ST
Sbjct: 43 QRTKTPRSSY-DSPSSSTNSKEHNSPYHYRVPSNNST 78


>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 12/42 (28%), Positives = 21/42 (50%)

Query: 6   QRRTTPHNAAQRRTTPHSTAAPNVLAAVQAPDSNPLFHFRVP 47
           +RR+       +R    STA  +V A + +P S P++ +  P
Sbjct: 232 ERRSRFDQPPSKRMALTSTARESVPAPLPSPPSGPIYTYTYP 273


>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 10/37 (27%), Positives = 17/37 (45%)

Query: 16  QRRTTPHSTAAPNVLAAVQAPDSNPLFHFRVPGSGST 52
           + +T   S  AP+      +P  + +F F  P + ST
Sbjct: 444 ENKTPVFSFKAPSATTDKPSPPVSSIFSFNAPSAAST 480


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 1158

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 16 QRRTTPHSTAAPNVLAAVQAPDSNPLFHFRVPGS 49
          QRR++   T +P  L++  + + N   HFR   S
Sbjct: 40 QRRSSGSITHSPTALSSTTSLNENDGNHFRPASS 73


>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)

Query: 25  AAPNVLAAVQAPDSNP 40
           A P V AA + P+SNP
Sbjct: 254 AQPEVSAASEQPESNP 269


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.122    0.366 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 247,743
Number of Sequences: 5004
Number of extensions: 6656
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 5
length of query: 52
length of database: 2,362,478
effective HSP length: 33
effective length of query: 19
effective length of database: 2,197,346
effective search space: 41749574
effective search space used: 41749574
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)