GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002553-TA|BGIBMGA002553-PA|undefined
         (52 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0955 + 22994266-22995630                                         26   4.3  
12_01_0880 - 8447941-8447981,8448928-8449261                           25   5.7  
08_02_1237 + 25475219-25475916,25476127-25476320,25476407-254773...    25   7.5  
11_01_0417 - 3214320-3214435,3214606-3214702,3214766-3214768,321...    25   9.9  
09_04_0205 + 15598295-15598600                                         25   9.9  

>08_02_0955 + 22994266-22995630
          Length = 454

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 5  AQRRTTPHNAAQRRTTPHSTAAPNVLAA 32
          ++ +T PHNAA   +TP S A   V A+
Sbjct: 45 SRSKTPPHNAAVLSSTPASAAVDFVAAS 72


>12_01_0880 - 8447941-8447981,8448928-8449261
          Length = 124

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 1  MKHAAQRRTTPHNAAQRRTTPHSTAAPNV-LAAVQAPDSNPL 41
          M  AA  R  P  AA R T P + +AP    AA  AP   P+
Sbjct: 1  MAAAAAPRADPAAAALRPTDPETASAPRADPAAAAAPRVYPV 42


>08_02_1237 +
           25475219-25475916,25476127-25476320,25476407-25477302,
           25477416-25477490,25477582-25477689,25477780-25477897,
           25478007-25478142,25478228-25478372,25478460-25479080,
           25479166-25479597
          Length = 1140

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 12/38 (31%), Positives = 19/38 (50%)

Query: 2   KHAAQRRTTPHNAAQRRTTPHSTAAPNVLAAVQAPDSN 39
           K + +RR   HN  +R+T P   A+  +L   Q   +N
Sbjct: 244 KRSCRRRLAGHNRRRRKTQPTDVASQLLLPGNQENAAN 281


>11_01_0417 -
           3214320-3214435,3214606-3214702,3214766-3214768,
           3215054-3215196,3215309-3215348,3215713-3215765,
           3215889-3215962,3216081-3216163,3216287-3216355,
           3216456-3216800
          Length = 340

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 12/30 (40%), Positives = 14/30 (46%)

Query: 2   KHAAQRRTTPHNAAQRRTTPHSTAAPNVLA 31
           KH A      HNA Q   T HST + +  A
Sbjct: 240 KHRASPAPAHHNARQINNTHHSTTSSSAPA 269


>09_04_0205 + 15598295-15598600
          Length = 101

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 6  QRRTTPHNAAQ-RRTTPHSTAAPNVLAAVQAPDSNPLFHFRVPG 48
          Q +   H A Q RR  P+S  A +V A     D    FH  V G
Sbjct: 40 QAQVATHMALQHRRIDPNSVIACSVAATRMRRDCRSKFHAAVTG 83


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.122    0.366 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,733,016
Number of Sequences: 37544
Number of extensions: 51581
Number of successful extensions: 153
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 148
Number of HSP's gapped (non-prelim): 6
length of query: 52
length of database: 14,793,348
effective HSP length: 33
effective length of query: 19
effective length of database: 13,554,396
effective search space: 257533524
effective search space used: 257533524
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)