GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002553-TA|BGIBMGA002553-PA|undefined
         (52 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M55420-1|AAA63199.1|   68|Homo sapiens immunoglobulin epsilon-ch...    28   4.1  
AK127721-1|BAC87100.1|  733|Homo sapiens protein ( Homo sapiens ...    28   4.1  
AL133410-17|CAI10994.1|  702|Homo sapiens chromosome 9 open read...    27   7.2  
AF149297-1|AAF34820.1|  704|Homo sapiens NAG-5 protein protein.        27   7.2  
AK131465-1|BAD18610.1|  168|Homo sapiens protein ( Homo sapiens ...    27   9.5  
AF157327-1|AAF67493.1|  583|Homo sapiens AD-012 protein protein.       27   9.5  

>M55420-1|AAA63199.1|   68|Homo sapiens immunoglobulin
          epsilon-chain protein.
          Length = 68

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 20/43 (46%), Positives = 21/43 (48%), Gaps = 3/43 (6%)

Query: 7  RRTTP-HNAAQRRT-TPHSTAAPNVLAAVQAPDSNPLFHFRVP 47
          RRT P     QRR   PH  A P   AA +APD  P  H R P
Sbjct: 23 RRTLPAQRELQRRPHAPHGAAVPLSHAAGEAPDL-PRLHQRPP 64


>AK127721-1|BAC87100.1|  733|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45821 fis, clone NT2RP8001584. ).
          Length = 733

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/32 (40%), Positives = 15/32 (46%)

Query: 5   AQRRTTPHNAAQRRTTPHSTAAPNVLAAVQAP 36
           A  RT P+ A    TTPH T+ P   A    P
Sbjct: 657 APHRTAPYLATSHHTTPHHTSLPTHGAGCPPP 688


>AL133410-17|CAI10994.1|  702|Homo sapiens chromosome 9 open reading
           frame 127 protein.
          Length = 702

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 20  TPHSTAAPNVLAAVQAPDSNPLFHFRVP 47
           T +ST +P  L+  ++  S  LFHF VP
Sbjct: 87  TDYSTCSPRKLSPFRSFASTELFHFHVP 114


>AF149297-1|AAF34820.1|  704|Homo sapiens NAG-5 protein protein.
          Length = 704

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 20  TPHSTAAPNVLAAVQAPDSNPLFHFRVP 47
           T +ST +P  L+  ++  S  LFHF VP
Sbjct: 89  TDYSTCSPRKLSPFRSFASTELFHFHVP 116


>AK131465-1|BAD18610.1|  168|Homo sapiens protein ( Homo sapiens
           cDNA FLJ16631 fis, clone TESTI4021482, moderately
           similar to RAC-alpha serine/threonine kinase (EC
           2.7.1.-). ).
          Length = 168

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/45 (31%), Positives = 19/45 (42%)

Query: 3   HAAQRRTTPHNAAQRRTTPHSTAAPNVLAAVQAPDSNPLFHFRVP 47
           H A+    PH     R+   S     + A   AP +  L+H RVP
Sbjct: 80  HVARSPDFPHTRPHLRSLLQSWYKEGLAAPTSAPGAQRLWHCRVP 124


>AF157327-1|AAF67493.1|  583|Homo sapiens AD-012 protein protein.
          Length = 583

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 3   HAAQRRTTPHNAAQRRTTPHSTAAPNVLAAVQAPDSNPLFHFRVPGSGST 52
           HA +  +TPH  A   +T  S A     AA  AP S P     +PGS ST
Sbjct: 152 HATRSTSTPHTHASVESTASSAAFS--AAATSAP-SAPSSGVVLPGSMST 198


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.315    0.122    0.366 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,840,627
Number of Sequences: 224733
Number of extensions: 273077
Number of successful extensions: 768
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 758
Number of HSP's gapped (non-prelim): 12
length of query: 52
length of database: 73,234,838
effective HSP length: 32
effective length of query: 20
effective length of database: 66,043,382
effective search space: 1320867640
effective search space used: 1320867640
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)