GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002553-TA|BGIBMGA002553-PA|undefined
         (52 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interactin...    30   0.17 
AC006695-3|AAF39976.1|  351|Caenorhabditis elegans Hypothetical ...    27   1.6  
U88172-11|AAB42257.1|  390|Caenorhabditis elegans Hypothetical p...    25   6.4  
U88172-10|AAM97988.1|  437|Caenorhabditis elegans Hypothetical p...    25   6.4  
AF038612-3|AAB92045.2|  432|Caenorhabditis elegans Hypothetical ...    25   8.5  

>U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interacting
           protein protein16, isoform d protein.
          Length = 1030

 Score = 30.3 bits (65), Expect = 0.17
 Identities = 14/34 (41%), Positives = 19/34 (55%)

Query: 12  HNAAQRRTTPHSTAAPNVLAAVQAPDSNPLFHFR 45
           H+ +QR TTP +T A N +A   AP   P  + R
Sbjct: 924 HHHSQRPTTPGATRARNYIARATAPSPTPYSYDR 957


>AC006695-3|AAF39976.1|  351|Caenorhabditis elegans Hypothetical
          protein W06H8.4 protein.
          Length = 351

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 13/34 (38%), Positives = 17/34 (50%)

Query: 8  RTTPHNAAQRRTTPHSTAAPNVLAAVQAPDSNPL 41
          +TTPH   + RTT  STA+         P  +PL
Sbjct: 47 KTTPHTTLKPRTTKKSTASNKERKDPNCPFGSPL 80


>U88172-11|AAB42257.1|  390|Caenorhabditis elegans Hypothetical
           protein ZK354.2a protein.
          Length = 390

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 3   HAAQRRTTPHNAAQRRTTPHSTAA-PNVLAAVQAP 36
           H  +R T P  AA  RTTP +TA   ++L  ++ P
Sbjct: 247 HLKRRITAPMVAAVWRTTPETTAGFFDLLTVIREP 281


>U88172-10|AAM97988.1|  437|Caenorhabditis elegans Hypothetical
           protein ZK354.2b protein.
          Length = 437

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 3   HAAQRRTTPHNAAQRRTTPHSTAA-PNVLAAVQAP 36
           H  +R T P  AA  RTTP +TA   ++L  ++ P
Sbjct: 247 HLKRRITAPMVAAVWRTTPETTAGFFDLLTVIREP 281


>AF038612-3|AAB92045.2|  432|Caenorhabditis elegans Hypothetical
           protein F13B6.3 protein.
          Length = 432

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 10/30 (33%), Positives = 14/30 (46%)

Query: 9   TTPHNAAQRRTTPHSTAAPNVLAAVQAPDS 38
           TTP   A+  T P  T  P      +AP++
Sbjct: 353 TTPKPTAKPTTAPECTCPPTTFPTTRAPNT 382


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.315    0.122    0.366 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,369,920
Number of Sequences: 27539
Number of extensions: 38066
Number of successful extensions: 125
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 119
Number of HSP's gapped (non-prelim): 6
length of query: 52
length of database: 12,573,161
effective HSP length: 33
effective length of query: 19
effective length of database: 11,664,374
effective search space: 221623106
effective search space used: 221623106
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)