GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002553-TA|BGIBMGA002553-PA|undefined
         (52 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   0.17 
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    19   6.4  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    19   6.4  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    19   6.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    18   8.4  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.8 bits (49), Expect = 0.17
 Identities = 11/24 (45%), Positives = 13/24 (54%)

Query: 18  RTTPHSTAAPNVLAAVQAPDSNPL 41
           R TP+ TA P  LA    P+  PL
Sbjct: 205 RETPNYTACPPTLACPLNPNPQPL 228


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 18.6 bits (36), Expect = 6.4
 Identities = 9/26 (34%), Positives = 12/26 (46%)

Query: 22  HSTAAPNVLAAVQAPDSNPLFHFRVP 47
           H+    N+LAA        +FHF  P
Sbjct: 275 HNVFVNNILAASACSLFVVIFHFAHP 300


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 18.6 bits (36), Expect = 6.4
 Identities = 6/13 (46%), Positives = 7/13 (53%)

Query: 10  TPHNAAQRRTTPH 22
           TPH+      TPH
Sbjct: 429 TPHHHHSHAATPH 441


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 18.6 bits (36), Expect = 6.4
 Identities = 9/21 (42%), Positives = 13/21 (61%), Gaps = 3/21 (14%)

Query: 10  TPHNAAQRRTTPHSTAAPNVL 30
           T HN    R+TP S A P+++
Sbjct: 258 TNHN---ERSTPRSHAKPSLI 275


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
          protein.
          Length = 1770

 Score = 18.2 bits (35), Expect = 8.4
 Identities = 9/20 (45%), Positives = 10/20 (50%)

Query: 22 HSTAAPNVLAAVQAPDSNPL 41
          H+      L  VQA DSN L
Sbjct: 47 HTGILIKALLTVQAKDSNVL 66


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.122    0.366 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,740
Number of Sequences: 429
Number of extensions: 395
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 52
length of database: 140,377
effective HSP length: 32
effective length of query: 20
effective length of database: 126,649
effective search space:  2532980
effective search space used:  2532980
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)
S2: 35 (18.2 bits)