GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002552-TA|BGIBMGA002552-PA|IPR009269|Protein of unknown
function DUF926, IPR013090|Phospholipase A2, active site
         (1561 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    46   6e-05
SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1 |Schiz...    28   9.0  
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    28   9.0  

>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 45.6 bits (103), Expect = 6e-05
 Identities = 38/155 (24%), Positives = 72/155 (46%), Gaps = 2/155 (1%)

Query: 5   LQEMLETINNSKVDDVITILPSWAHFYKILAIDPDRKVREYTQLCHSSVVRACGRRLAPR 64
           LQ++++  + S+ D+    L + A  +  L+I+ +R VR    +  S +  A  ++LAP 
Sbjct: 72  LQDLIQWNDPSQFDNE-QFLNALAVLFPRLSIEVERHVRLKIFVFMSVLSSALQKKLAPW 130

Query: 65  LRQLVPAWLQARHDEHGPAQAHARTSLASTFPDAKLPEVLAFCKTEVMTHFLDNLIGTGE 124
           L+  +  W+    D        A+ S  +   + K P V     + +     D  +   +
Sbjct: 131 LKFYITPWVMGFFDSDRAVSVSAKDSFKNLLSEEKWPHVWLKFGSTIAPIVTDVFLHEDK 190

Query: 125 ASISK-KADSPEDKEQQVTRLISSSLLGLEYFVRQ 158
            S++  +  S E+ E +VTR+ SS LL L +  +Q
Sbjct: 191 ESLTDLRFFSNEEAESKVTRVKSSCLLTLSFLFKQ 225


>SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 451

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 18/68 (26%), Positives = 32/68 (47%)

Query: 357 LRHLARQDDDFVLEVVTSVHRAWLRRVLAPRSDQRLMHELIKCSASNMAACVKFWHQQSE 416
           L+ L+ +D D  L+ +    R     VLA  ++     +L+  S    ++ VK     S 
Sbjct: 17  LQTLSVEDRDDALDKIVEELRIKKSEVLAANAEDMKAAKLLAESGKLSSSMVKRLDLSSS 76

Query: 417 DKYDQLIR 424
           DKYD +++
Sbjct: 77  DKYDSMVQ 84


>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 34/135 (25%), Positives = 53/135 (39%), Gaps = 13/135 (9%)

Query: 68  LVPAWLQ--ARHDEHGPAQAHARTSLASTFPDAKLPEVLAFCKTEVMTHFLDNLIGTGEA 125
           +V  W+Q     D H P Q H   S++S F       +  + +T+V+ H   +    GE 
Sbjct: 334 MVDVWMQLCTYIDSHNPIQFHLPHSISSFFRGVGSGVMGEYIETDVLKHLKSSRRSNGEE 393

Query: 126 S----ISKKADSP-EDKEQQVTRLISSSLLGLEYFVRQLPAQHDAWLWAQLSALLHAAAF 180
                +  K+ +P        + L+S S+L  +Y        H   L   L+ L      
Sbjct: 394 RDPLLLKSKSGTPILCFRCHKSALVSQSILACDYCNSY---WHPDCLNPPLATLPSNLRK 450

Query: 181 WKLAAHS---SPRIR 192
           WK   HS   +PR R
Sbjct: 451 WKCPNHSDHVTPRYR 465


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.133    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,425,745
Number of Sequences: 5004
Number of extensions: 186785
Number of successful extensions: 435
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 432
Number of HSP's gapped (non-prelim): 4
length of query: 1561
length of database: 2,362,478
effective HSP length: 82
effective length of query: 1479
effective length of database: 1,952,150
effective search space: 2887229850
effective search space used: 2887229850
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)