GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002552-TA|BGIBMGA002552-PA|IPR009269|Protein of unknown
function DUF926, IPR013090|Phospholipase A2, active site
         (1561 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical ...   113   9e-25
AC024202-5|AAP86609.1|  827|Caenorhabditis elegans C. elegans AP...    33   1.6  
AC024202-3|AAF36038.2|  955|Caenorhabditis elegans C. elegans AP...    33   1.6  
U00036-3|AAT92065.1|  529|Caenorhabditis elegans Dumpy : shorter...    31   8.6  
U00036-2|AAK29859.1|  592|Caenorhabditis elegans Dumpy : shorter...    31   8.6  

>AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical
            protein E01A2.4 protein.
          Length = 504

 Score =  113 bits (272), Expect = 9e-25
 Identities = 51/88 (57%), Positives = 69/88 (78%)

Query: 1472 FVADGKRIPRRGEIGLTSDEIASYEAVGYVMSGSRHRRMEAVRIRKENQIYSADEKRALA 1531
            + A G+RIPRRGEIGL+S EIA YE VGYVMSGSRH+ MEA R+RKENQ+++A+EKR L 
Sbjct: 416  YAARGERIPRRGEIGLSSGEIAEYEKVGYVMSGSRHKAMEATRLRKENQVFTAEEKRILN 475

Query: 1532 AFSKDERNKRENAILSQFRDVLKARQKR 1559
            + S + + K+E A+L QFR+++  +  R
Sbjct: 476  SVSVEAKKKKEEAVLDQFRNLIHHKNMR 503


>AC024202-5|AAP86609.1|  827|Caenorhabditis elegans C. elegans APB-1
           protein, isoform c protein.
          Length = 827

 Score = 33.1 bits (72), Expect = 1.6
 Identities = 23/116 (19%), Positives = 56/116 (48%), Gaps = 4/116 (3%)

Query: 320 KHFYEQFFDAIFVGLEKKNILSSKSERQSWLSGLAEALRHLARQDDDFVLEVVTSVHRAW 379
           K F+ ++ D I+V +EK +I+   +++ +    L+E   +    D DFV + V ++ R  
Sbjct: 319 KVFFVKYNDPIYVKMEKLDIMIRLAQQNNIAQVLSELKEYATEVDVDFVRKSVRAIGRCA 378

Query: 380 LRRVLAPRSDQRLMHELIKCSAS----NMAACVKFWHQQSEDKYDQLIRNFWQNVN 431
           ++   +     + + ELI+   +         +K   ++  ++Y+ +I    +N++
Sbjct: 379 IKVEASSERCVQTLLELIQTKVNYVVQEAVVVIKDIFRKYPNRYESIISALCENLD 434


>AC024202-3|AAF36038.2|  955|Caenorhabditis elegans C. elegans APB-1
           protein, isoform a protein.
          Length = 955

 Score = 33.1 bits (72), Expect = 1.6
 Identities = 23/116 (19%), Positives = 56/116 (48%), Gaps = 4/116 (3%)

Query: 320 KHFYEQFFDAIFVGLEKKNILSSKSERQSWLSGLAEALRHLARQDDDFVLEVVTSVHRAW 379
           K F+ ++ D I+V +EK +I+   +++ +    L+E   +    D DFV + V ++ R  
Sbjct: 319 KVFFVKYNDPIYVKMEKLDIMIRLAQQNNIAQVLSELKEYATEVDVDFVRKSVRAIGRCA 378

Query: 380 LRRVLAPRSDQRLMHELIKCSAS----NMAACVKFWHQQSEDKYDQLIRNFWQNVN 431
           ++   +     + + ELI+   +         +K   ++  ++Y+ +I    +N++
Sbjct: 379 IKVEASSERCVQTLLELIQTKVNYVVQEAVVVIKDIFRKYPNRYESIISALCENLD 434


>U00036-3|AAT92065.1|  529|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 31, isoform b protein.
          Length = 529

 Score = 30.7 bits (66), Expect = 8.6
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 401 ASNMAACVKFWHQQSEDKYDQLIRNFWQNVN 431
           A  +A  + FWH+QS    DQ +   W+N++
Sbjct: 221 AHEVAHALGFWHEQSRPDRDQYVTVRWENID 251


>U00036-2|AAK29859.1|  592|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 31, isoform a protein.
          Length = 592

 Score = 30.7 bits (66), Expect = 8.6
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 401 ASNMAACVKFWHQQSEDKYDQLIRNFWQNVN 431
           A  +A  + FWH+QS    DQ +   W+N++
Sbjct: 221 AHEVAHALGFWHEQSRPDRDQYVTVRWENID 251


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.133    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,652,697
Number of Sequences: 27539
Number of extensions: 1037965
Number of successful extensions: 2401
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2393
Number of HSP's gapped (non-prelim): 8
length of query: 1561
length of database: 12,573,161
effective HSP length: 91
effective length of query: 1470
effective length of database: 10,067,112
effective search space: 14798654640
effective search space used: 14798654640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 66 (30.7 bits)