GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002550-TA|BGIBMGA002550-PA|IPR001873|Na+ channel,
amiloride-sensitive
         (341 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    24   1.8  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   3.2  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    22   7.4  
AF260820-1|AAG02018.1|  139|Tribolium castaneum alpha-esterase l...    22   7.4  

>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 6/56 (10%)

Query: 265 FPEENNLLHNSIYSYTMCRMECRIRLCLKY-CRCIPHFYRKIVAVGGMAGLFLGCS 319
           F  +N LL   +  Y+     C I   L +  RC+   +    AVGG A +  GCS
Sbjct: 299 FTIDNKLLFGVLAYYSTT---CDIATILDFWVRCVLSLH--CAAVGGSANIMSGCS 349


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 8/26 (30%), Positives = 15/26 (57%)

Query: 71  LDEKKLAIYLRSFKEEDKSTLEAFIR 96
           +D  +  + + S ++EDK   + FIR
Sbjct: 368 IDHNEAVLRIESVRKEDKGMYQCFIR 393


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 227 TKNMYSEKDFYLKLYVTAVAIYTTS 251
           T + YS+K FY K+ ++     TT+
Sbjct: 223 TFSWYSKKVFYSKIIISGSIFMTTT 247


>AF260820-1|AAG02018.1|  139|Tribolium castaneum alpha-esterase like
           protein E1 protein.
          Length = 139

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 196 VYAQVMTIDWVQILSSPQVYIHGPSEVPDVATKNMYSEKDFYLKLYVTAVAI 247
           VY + +  D  +I      +IHG   V    T  MY   D+ +   V  V I
Sbjct: 60  VYTKNLRTDTNRITQPVLFWIHGGDFVTGSGTSEMYG-PDYLMSENVVLVTI 110


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.324    0.137    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,326
Number of Sequences: 317
Number of extensions: 3278
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 4
length of query: 341
length of database: 114,650
effective HSP length: 57
effective length of query: 284
effective length of database: 96,581
effective search space: 27429004
effective search space used: 27429004
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 43 (21.4 bits)