GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002550-TA|BGIBMGA002550-PA|IPR001873|Na+ channel,
amiloride-sensitive
         (341 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    27   3.8  
SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po...    26   6.7  

>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 171 YRSANRWDIIKK-PNETLFIHPLDGEVYAQVMTIDWVQILSSPQVYIHGPSEV 222
           Y+    W+   + PN  L  H LDG++     T++    +  P +++   S++
Sbjct: 921 YKEILSWEPANQSPNPVLKFHKLDGKIIDSFKTVEHYMEVLQPMIFMECWSQI 973


>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 942

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 2/68 (2%)

Query: 216 IHGPSEVPDVA-TKNMYSEK-DFYLKLYVTAVAIYTTSDAAELSISQRRCRFPEENNLLH 273
           +HG S    VA T++ Y++  DFY KL    VA + TSD+    +     R    +   +
Sbjct: 6   VHGISCYSVVANTEDTYNQTLDFYQKLGFKKVASFGTSDSDNARVCNESLREDWMHVAGN 65

Query: 274 NSIYSYTM 281
           NS  S T+
Sbjct: 66  NSAESVTI 73


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.324    0.137    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,564,467
Number of Sequences: 5004
Number of extensions: 64933
Number of successful extensions: 198
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 197
Number of HSP's gapped (non-prelim): 2
length of query: 341
length of database: 2,362,478
effective HSP length: 73
effective length of query: 268
effective length of database: 1,997,186
effective search space: 535245848
effective search space used: 535245848
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 54 (25.8 bits)