GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002550-TA|BGIBMGA002550-PA|IPR001873|Na+ channel,
amiloride-sensitive
         (341 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0182 + 5430380-5430694,5460162-5460950                           33   0.33 
02_02_0628 + 12365109-12365150,12366315-12366411,12366489-123665...    29   7.1  
02_04_0216 + 20986231-20988021                                         28   9.4  

>09_02_0182 + 5430380-5430694,5460162-5460950
          Length = 367

 Score = 33.1 bits (72), Expect = 0.33
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 69  NVLDEKKLAIYLRSFKEEDKSTLEAFIRGLSNISYE-NFNTVPIYDGIPSDK 119
           N+ D ++L I +  FK E     E F+  L  +S+   F T P+Y  IP D+
Sbjct: 95  NIYDVERLRIKMPRFKPEYLFGTEGFVLELRTMSFLIGFGTAPLYAQIPHDR 146


>02_02_0628 +
           12365109-12365150,12366315-12366411,12366489-12366554,
           12367884-12367963,12368051-12368125,12368232-12368381,
           12369816-12369881,12370141-12370206,12370653-12370763,
           12370917-12371003,12371087-12371193,12372141-12372255,
           12372472-12372537,12373521-12373615,12373700-12373880
          Length = 467

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 3/37 (8%)

Query: 91  LEAFIRGLSNISYENF---NTVPIYDGIPSDKYLELI 124
           L  F+RG S+  + N+     VP++D IP +K L+L+
Sbjct: 188 LPIFMRGGSSSKFLNYFVKQIVPVFDKIPEEKKLDLL 224


>02_04_0216 + 20986231-20988021
          Length = 596

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 49  MDRDMFAWNTTFPCVTICPDNVLDEKKLAIYLRSFKEEDKSTLEAFIRGLSNISY 103
           ++RD+ +WN+    VT    N   ++ LA++ R  K+E + T   F+  L+  S+
Sbjct: 367 LERDIISWNSM---VTGFSHNGQGKQSLAVFERMLKDEVQPTYVTFLAVLTACSH 418


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.324    0.137    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,297,135
Number of Sequences: 37544
Number of extensions: 349880
Number of successful extensions: 957
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 957
Number of HSP's gapped (non-prelim): 3
length of query: 341
length of database: 14,793,348
effective HSP length: 83
effective length of query: 258
effective length of database: 11,677,196
effective search space: 3012716568
effective search space used: 3012716568
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 60 (28.3 bits)