GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002549-TA|BGIBMGA002549-PA|IPR000618|Insect cuticle
protein
         (144 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0495 - 29779499-29781325                                         27   4.5  
01_06_0568 + 30305008-30305170,30305277-30305341,30306599-303067...    27   5.9  
02_05_0883 - 32481502-32483085                                         27   7.9  
01_02_0068 - 10803815-10804391,10804487-10804722,10804808-108049...    27   7.9  

>01_06_0495 - 29779499-29781325
          Length = 608

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 11/29 (37%), Positives = 20/29 (68%), Gaps = 3/29 (10%)

Query: 110 YSYVDLDGKVHETTYTADENGFHPSGADI 138
           YS+++LDG+VH+      ++ +HP  A+I
Sbjct: 557 YSWIELDGEVHKFLV---QDTYHPKSAEI 582


>01_06_0568 +
           30305008-30305170,30305277-30305341,30306599-30306769,
           30307409-30307978,30308085-30308444,30308496-30308774
          Length = 535

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 14/30 (46%), Positives = 16/30 (53%)

Query: 77  GFGFETSDGKTAQESAVLKNVGTENEALEV 106
           G G+ T DG+  Q SAVL   G     LEV
Sbjct: 479 GLGWHTPDGEQLQRSAVLHFSGPRKPWLEV 508


>02_05_0883 - 32481502-32483085
          Length = 527

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 3/38 (7%)

Query: 104 LEVRGQYSYVDLDGKVHETTYTADENGFHPSGADIPQL 141
           L  R  YS V++DG VHE   + D +  HP   +I Q+
Sbjct: 470 LRKRPGYSAVEIDGDVHEFV-SGDRS--HPQAEEISQM 504


>01_02_0068 -
           10803815-10804391,10804487-10804722,10804808-10804978,
           10805709-10805867
          Length = 380

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query: 66  QTFDNIGVEGYGFGFETSDGKTAQESAVLKNV 97
           QTFDN+ V    FG E   G  + E A ++ V
Sbjct: 327 QTFDNLTVIVICFGSELGGGSPSSEQAPIRRV 358


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.134    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,811,314
Number of Sequences: 37544
Number of extensions: 125861
Number of successful extensions: 187
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 185
Number of HSP's gapped (non-prelim): 4
length of query: 144
length of database: 14,793,348
effective HSP length: 75
effective length of query: 69
effective length of database: 11,977,548
effective search space: 826450812
effective search space used: 826450812
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 56 (26.6 bits)