GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002549-TA|BGIBMGA002549-PA|IPR000618|Insect cuticle
protein
         (144 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    58   4e-11

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 58.0 bits (134), Expect = 4e-11
 Identities = 36/87 (41%), Positives = 46/87 (52%), Gaps = 3/87 (3%)

Query: 59  KDAVILQQTFDNIGVEG-YGFGFETSDGKTAQESAVLKNVGTENEALEVRGQYSYVDLDG 117
           KDAVI  Q  + +  +G Y   FETS+G + QES   K V  E   +  +G  SY   DG
Sbjct: 25  KDAVITSQQLE-VNFDGNYINNFETSNGISHQESGQPKQVDNETPVVS-QGSDSYTAPDG 82

Query: 118 KVHETTYTADENGFHPSGADIPQLPQV 144
           +    TY ADENGF   G+ IP  P +
Sbjct: 83  QQVSITYVADENGFQVQGSHIPTAPPI 109


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.134    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,760
Number of Sequences: 429
Number of extensions: 1145
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1
length of query: 144
length of database: 140,377
effective HSP length: 52
effective length of query: 92
effective length of database: 118,069
effective search space: 10862348
effective search space used: 10862348
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.1 bits)
S2: 40 (20.2 bits)