GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002548-TA|BGIBMGA002548-PA|IPR000618|Insect cuticle
protein
         (105 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    24   4.4  
SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr 2|...    24   4.4  
SPBC902.05c |idh2|glu2|isocitrate dehydrogenase |Schizosaccharom...    24   5.8  

>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 37  VEGYNTGYETSNGIKAQETGQLKNIGTENEALEVRGEFAYIGPDGV 82
           V+   TGY     +KA E   ++  GT   A+    +FAY G DG+
Sbjct: 835 VKTAETGYIQRRLVKAMEDVMVRYDGTVRNAMGDIIQFAY-GEDGL 879


>SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 781

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 4/40 (10%)

Query: 41  NTGYETSNGIKAQETGQLKNIGTENEALEVRGEFAYIGPD 80
           N   ETS    A ETG L+ I  +++ +E   EF +I PD
Sbjct: 87  NNSEETS---AAGETGSLEGIEEDSDEIEDYAEFLHI-PD 122


>SPBC902.05c |idh2|glu2|isocitrate dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 9/34 (26%), Positives = 18/34 (52%)

Query: 35  IGVEGYNTGYETSNGIKAQETGQLKNIGTENEAL 68
           + + GY T Y+  N +  +E  + +  G E+E +
Sbjct: 141 VSITGYKTPYDNVNTVLIRENTEGEYSGIEHEVI 174


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.310    0.133    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 385,713
Number of Sequences: 5004
Number of extensions: 13044
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 3
length of query: 105
length of database: 2,362,478
effective HSP length: 63
effective length of query: 42
effective length of database: 2,047,226
effective search space: 85983492
effective search space used: 85983492
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 48 (23.4 bits)