GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002548-TA|BGIBMGA002548-PA|IPR000618|Insect cuticle
protein
         (105 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0639 + 30772804-30772904,30773386-30775675                       27   2.2  
11_06_0523 - 24570683-24571126,24571210-24571808,24573300-24573600     26   6.6  
03_05_0845 - 28155065-28155374,28156201-28156342,28156375-281565...    26   6.6  
05_01_0264 + 2030080-2031270                                           25   8.8  
01_05_0693 - 24339917-24340524,24340778-24341252                       25   8.8  

>01_06_0639 + 30772804-30772904,30773386-30775675
          Length = 796

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 5/56 (8%)

Query: 29  RQDNDNIGVEGYNTGYETSNGIKAQETGQLKNIGTENEALEVRGEFAYIGPDGVTY 84
           R+  +N GV GY TG+   +G     +G   N     +A + R ++ Y GP G +Y
Sbjct: 221 RRQGNNSGVSGYGTGHH-YHGSDTYRSGY--NTQNNQQAYDSR-QYGY-GPSGQSY 271


>11_06_0523 -
          24570683-24571126,24571210-24571808,24573300-24573600
          Length = 447

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/26 (50%), Positives = 16/26 (61%)

Query: 72 GEFAYIGPDGVTYAVTYVANEGGFQP 97
          GEFA  G D  T + + +AN GG QP
Sbjct: 4  GEFADFGMDVGTVSPSPLANVGGSQP 29


>03_05_0845 -
           28155065-28155374,28156201-28156342,28156375-28156505,
           28156591-28156784,28156859-28156969,28157234-28157399,
           28157501-28157668,28157766-28158787
          Length = 747

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 8/22 (36%), Positives = 14/22 (63%)

Query: 70  VRGEFAYIGPDGVTYAVTYVAN 91
           + G+  ++GPDG TY   + A+
Sbjct: 96  IEGQGVFVGPDGATYRGAWAAD 117


>05_01_0264 + 2030080-2031270
          Length = 396

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 2/68 (2%)

Query: 29  RQDNDNIGVEGYNTGYETSNGIKAQETGQL--KNIGTENEALEVRGEFAYIGPDGVTYAV 86
           R +    G +G+  GY T    +      +    +G     +   G  A++ PDG T   
Sbjct: 117 RPEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCAWLRPDGKTQVT 176

Query: 87  TYVANEGG 94
               NE G
Sbjct: 177 VEYRNESG 184


>01_05_0693 - 24339917-24340524,24340778-24341252
          Length = 360

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 47  SNGIKAQETGQLKNIGTENEALEVRGEFAYIGPDGVTYAVTYVANEGGFQPSAPH 101
           + G+    TG L ++ +E + L+  G         V+ A+ Y+A  GG Q  A +
Sbjct: 170 TEGLVQLATGNLVSL-SEQQVLDCTGGANTCSGGDVSAALRYIAASGGLQTEAAY 223


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.310    0.133    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,419,918
Number of Sequences: 37544
Number of extensions: 82317
Number of successful extensions: 118
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 115
Number of HSP's gapped (non-prelim): 5
length of query: 105
length of database: 14,793,348
effective HSP length: 72
effective length of query: 33
effective length of database: 12,090,180
effective search space: 398975940
effective search space used: 398975940
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 53 (25.4 bits)