GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002548-TA|BGIBMGA002548-PA|IPR000618|Insect cuticle
protein
         (105 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    63   6e-13
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   4.1  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   4.1  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 63.3 bits (147), Expect = 6e-13
 Identities = 30/66 (45%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 40  YNTGYETSNGIKAQETGQLKNIGTENEALEVRGEFAYIGPDGVTYAVTYVANEGGFQPSA 99
           Y   +ETSNGI  QE+GQ K +  E   +  +G  +Y  PDG   ++TYVA+E GFQ   
Sbjct: 42  YINNFETSNGISHQESGQPKQVDNETPVVS-QGSDSYTAPDGQQVSITYVADENGFQVQG 100

Query: 100 PHIPKA 105
            HIP A
Sbjct: 101 SHIPTA 106


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 20.6 bits (41), Expect = 4.1
 Identities = 7/13 (53%), Positives = 8/13 (61%)

Query: 91  NEGGFQPSAPHIP 103
           N G F PS P+ P
Sbjct: 59  NPGNFSPSGPNSP 71


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 20.6 bits (41), Expect = 4.1
 Identities = 7/13 (53%), Positives = 8/13 (61%)

Query: 91  NEGGFQPSAPHIP 103
           N G F PS P+ P
Sbjct: 59  NPGNFSPSGPNSP 71


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.310    0.133    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,860
Number of Sequences: 429
Number of extensions: 911
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 105
length of database: 140,377
effective HSP length: 50
effective length of query: 55
effective length of database: 118,927
effective search space:  6540985
effective search space used:  6540985
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (19.9 bits)
S2: 38 (19.4 bits)