GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002547-TA|BGIBMGA002547-PA|IPR008278|4'-
phosphopantetheinyl transferase, IPR000421|Coagulation factor 5/8
type, C-terminal, IPR012680|Laminin G, subdomain 2,
IPR006209|EGF-like, IPR001304|C-type lectin, IPR001791|Laminin G,
IPR006210|EGF, IPR008985|Concanavalin A-like lectin/glucanase,
IPR008979|Galactose-binding like, IPR000742|EGF-like, type 3
         (1564 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.02c |lys7||alpha-aminoadipate reductase phosphopantethe...    71   2e-12
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    32   0.55 
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    30   3.0  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    30   3.0  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    29   3.9  
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran...    29   5.2  
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ...    28   9.0  

>SPAC17C9.02c |lys7||alpha-aminoadipate reductase
           phosphopantetheinyl transferase Lys7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 70.5 bits (165), Expect = 2e-12
 Identities = 49/188 (26%), Positives = 90/188 (47%), Gaps = 17/188 (9%)

Query: 8   RWAFNTREWQPAKEEILLPSSYIQNEEKQRISRFVFQNDAKSSLIGRLMLRKYVQTSTST 67
           R   +T+E  P +   +     + + E+Q+I R+ F  DAK +L   L+ R  V T+   
Sbjct: 7   RLLIDTQEAWPFERTRIPSFKKLSDSERQQIERYYFDMDAKMALASILIKRHLVSTALEC 66

Query: 68  PYDEIKFGRDDRGKPFLLNP--IDLKISFNVSHQGDFVVL---------AGCKDWNVGID 116
             +E++      G+P+  +     +   FNVSH G  V++         +G +  N+G+D
Sbjct: 67  SPNEVQISVTKAGRPYCQSAHCPPIIFDFNVSHYGGIVIVVGAWLPSDPSGMRPINIGVD 126

Query: 117 VMKIEPPVNKNIPEFFRIMARQFSPREWSTIRSFPTELEQIACFYRIWCLKESYVKNVGF 176
           +++ +P   +    +       F+P EW  I+S    +  I  F+ +W  KE+ +K +G 
Sbjct: 127 IVECKPLAFE--ASWMEDFMSVFTPCEWKLIKS---SISSIDVFFLLWTCKEAILKALGI 181

Query: 177 GIT-VPLD 183
           G++  PLD
Sbjct: 182 GLSGNPLD 189


>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 688

 Score = 32.3 bits (70), Expect = 0.55
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 1326 SNISGEYLTLMVSNSGHLRVVFDFGFERQEIVFQGKHFALGQYHDVRLARRDSGATLALQ 1385
            SN S + L   +S + H  V  +       I F  K FALG  HD  L R+    TL L+
Sbjct: 438  SNNSSDLLERNMSYNAHPYVADNLNISSDHISFPSKPFALGLLHDTLLERK--SPTLGLE 495

Query: 1386 V 1386
            +
Sbjct: 496  M 496


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 1/31 (3%)

Query: 567 PNLQEGLVVNQNFTGCIEN-MYLNATNVIQD 596
           PNL EGLV  +N+ G +EN M LN T V ++
Sbjct: 809 PNLYEGLVFLKNYDGDVENDMALNFTVVHEE 839


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1374

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 14/43 (32%), Positives = 20/43 (46%)

Query: 230  VSLQKKDNSTDAPVCYKVLSYQELVEEAKSLCSTNAWTASESD 272
            ++L K      A +C  +  YQEL+E  +   S N W   E D
Sbjct: 1170 LNLHKYIQHESAAMCDAIFEYQELIEAFRETASENPWFWFEID 1212


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 6/83 (7%)

Query: 344 HKRVELRGIATKGRYATDEYVTEYMLQYSDDGESWKLVARRDGYTQMFHGNQDGDTVRKN 403
           H+ +     A+  +++ D   +EY L   +DGES  + A RD Y  +   N  G  V  +
Sbjct: 55  HQTLRPSSDASVSQFSMDYLQSEYNLNRYNDGES--IAASRD-YQSLLRDN--GSGVYSD 109

Query: 404 EFEV-PIIAQYLRINPMRWRDKI 425
           E E+  ++ + L I+P+  R+ +
Sbjct: 110 EEEITEMMLEELNIHPVLRRESV 132


>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 516

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 660 LLVYHRFNTEGYVKVYLEDGKVKVELETAGSPRVKLDNYVELWNDGRWHS 709
           +L + R   +GY ++    G++ +EL T  +P   + N+V+L   G + +
Sbjct: 266 MLNHTRIKHKGYARIVTNHGEINIELHTDYAPHA-VYNFVQLAKQGYYRN 314


>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
            Cct7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 558

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 13/33 (39%), Positives = 21/33 (63%)

Query: 1164 IERNRKEARLVVDGALKNEIRTVGGTARALQLS 1196
            +ER+  +A ++V  ALKN +   GG A  ++LS
Sbjct: 390  VERSLHDAIMIVKHALKNNLVVAGGGACEMELS 422


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.137    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,020,533
Number of Sequences: 5004
Number of extensions: 303549
Number of successful extensions: 608
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 602
Number of HSP's gapped (non-prelim): 7
length of query: 1564
length of database: 2,362,478
effective HSP length: 82
effective length of query: 1482
effective length of database: 1,952,150
effective search space: 2893086300
effective search space used: 2893086300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)